miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 244 bits (123), Expect = 2e-64
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1 aaatgcattacagggtaagatctctattggcaggaaaccattacttagatctttgcatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaatgcattacagggtaagatctctattggcaggaaaccattacttagatctttgcatct 60
Query: 61 ctttatgcattgcttttaattagtgagttatctgccaaaggagatttgccctgtaattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctttatgcattgcttttaattagtgagttatctgccaaaggagatttgccctgtaattct 120
Query: 121 tct 123
|||
Sbjct: 121 tct 123
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagatttgccctgtaattcttct 123
|||||||||||||||||||| |||||||||||
Sbjct: 86 ctgccaaaggagatttgcccagtaattcttct 117
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgccctgtaattct 120
||||||||||||||||||||| ||||||||
Sbjct: 86 tctgccaaaggagatttgcccggtaattct 115
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgccctgtaattcttct 123
||||||||||||||||||||| | |||||||||
Sbjct: 88 tctgccaaaggagatttgcccagcaattcttct 120
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgccctgtaattcttct 123
||||||||||||||||||||| | |||||||||
Sbjct: 84 tctgccaaaggagatttgcccggcaattcttct 116
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagatttgccctgtaattcttct 123
|||||||||||||||||||| | |||||||||
Sbjct: 63 ctgccaaaggagatttgcccggcaattcttct 94
>RF00445;mir-399;AC160628.37/72380-72494 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 80 ttagtgagttatctgccaaaggagatttgccc 111
|||||| || ||||||||||||||||||||||
Sbjct: 72 ttagtgtgtaatctgccaaaggagatttgccc 103
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 93 tgccaaaggagatttgccctgtaattcttct 123
||||||||||||||||||| | |||||||||
Sbjct: 92 tgccaaaggagatttgcccggcaattcttct 122
>RF00445;mir-399;AACV01003694.1/9714-9596 39947:Oryza sativa
Japonica Group
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 tatctgccaaaggagatttgccc 111
|||||||||||||||||||||||
Sbjct: 85 tatctgccaaaggagatttgccc 107
>RF00445;mir-399;AASG02001979.1/19710-19612 3988:Ricinus communis
(castor bean)
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 ttatctgccaaaggagatttgc 109
||||||||||||||||||||||
Sbjct: 64 ttatctgccaaaggagatttgc 85
>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgccctgtaa 116
|||||||||||||| |||||||||||
Sbjct: 70 tctgccaaaggagagttgccctgtaa 95
