miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 198 bits (100), Expect = 9e-51
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 ggttggattactgggcgaatactcctatggcagatcgcattggctagatatgcaagtaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttggattactgggcgaatactcctatggcagatcgcattggctagatatgcaagtaaa 60
Query: 61 atgcttctctgccaaaggagatttgccccgcaattcatcc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgcttctctgccaaaggagatttgccccgcaattcatcc 100
>RF00445;mir-399;AARH01002119.1/17334-17454 3694:Populus trichocarpa
Length = 121
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattcatc 99
|||||||||||||||||||||||||||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaattcatc 120
>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
(castor bean)
Length = 108
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattcatc 99
|||||||||||||||||||||||||||||||
Sbjct: 77 ctgccaaaggagatttgccccgcaattcatc 107
>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
Length = 136
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattca 97
|||||||||||||||||||||||||||||
Sbjct: 105 ctgccaaaggagatttgccccgcaattca 133
>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattca 97
|||||||||||||||||||||||||||||
Sbjct: 106 ctgccaaaggagatttgccccgcaattca 134
>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattca 97
|||||||||||||||||||||||||||||
Sbjct: 106 ctgccaaaggagatttgccccgcaattca 134
>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
Length = 119
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattca 97
|||||||||||||||||||||||||||||
Sbjct: 88 ctgccaaaggagatttgccccgcaattca 116
>RF00445;mir-399;AM470981.2/5848-5733 29760:Vitis vinifera
Length = 116
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattcatc 99
||||||||||||||||||||||||| |||||
Sbjct: 85 ctgccaaaggagatttgccccgcaactcatc 115
>RF00445;mir-399;AARH01002114.1/23429-23543 3694:Populus trichocarpa
Length = 115
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattcat 98
||||||||| ||||||||||||||||||||
Sbjct: 84 ctgccaaagaagatttgccccgcaattcat 113
>RF00445;mir-399;AASG02001979.1/11398-11282 3988:Ricinus communis
(castor bean)
Length = 117
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattcat 98
||||||||| ||||||||||||||||||||
Sbjct: 86 ctgccaaagaagatttgccccgcaattcat 115
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 67 ctctgccaaaggagatttgccccgcaattc 96
|||||||||||||||||||||| |||||||
Sbjct: 83 ctctgccaaaggagatttgcccggcaattc 112
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattca 97
|||||||||||||||||||| ||||||||
Sbjct: 78 ctgccaaaggagatttgcccggcaattca 106
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 68 tctgccaaaggagatttgccccgcaattc 96
||||||||||||||||||||| |||||||
Sbjct: 88 tctgccaaaggagatttgcccagcaattc 116
>RF00445;mir-399;AM467681.2/20491-20605 29760:Vitis vinifera
Length = 115
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattca 97
||||||||||||||||||||| |||||||
Sbjct: 84 ctgccaaaggagatttgcccctcaattca 112
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 66 tctctgccaaaggagatttgccccgcaat 94
||||||||||||||||||||||| |||||
Sbjct: 83 tctctgccaaaggagatttgcccagcaat 111
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattc 96
|||||||||||||||||||| |||||||
Sbjct: 63 ctgccaaaggagatttgcccggcaattc 90
>RF00445;mir-399;AC004481.3/13991-14099 3702:Arabidopsis thaliana
(thale cress)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 67 ctctgccaaaggagatttgccccgcaat 94
||||||||||||||||||||| ||||||
Sbjct: 76 ctctgccaaaggagatttgcctcgcaat 103
>RF00445;mir-399;AARH01014736.1/14382-14268 3694:Populus trichocarpa
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattc 96
||||||||| ||||||||||||||||||
Sbjct: 84 ctgccaaagaagatttgccccgcaattc 111
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattc 96
|||||||||||||||||||| |||||||
Sbjct: 85 ctgccaaaggagatttgcccagcaattc 112
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 67 ctctgccaaaggagatttgccccgcaat 94
|||||||||||||||||||||| |||||
Sbjct: 68 ctctgccaaaggagatttgcccagcaat 95
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 tctctgccaaaggagatttgccc 88
|||||||||||||||||||||||
Sbjct: 84 tctctgccaaaggagatttgccc 106
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 tgccaaaggagatttgccccgcaattc 96
||||||||||||||||||| |||||||
Sbjct: 92 tgccaaaggagatttgcccggcaattc 118
>RF00445;mir-399;AC160628.37/100813-100915 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 gccaaaggagatttgccccgcaattca 97
||||||| |||||||||||||||||||
Sbjct: 74 gccaaagaagatttgccccgcaattca 100
>RF00445;mir-399;AC111015.2/21804-21909 39947:Oryza sativa Japonica
Group
Length = 106
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaattcatc 99
||||||||||| |||||||||| ||||||||
Sbjct: 75 ctgccaaaggaaatttgccccggaattcatc 105
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaat 94
|||||||||||||||||||| |||||
Sbjct: 76 ctgccaaaggagatttgcccagcaat 101
>RF00445;mir-399;AACV01003694.1/9714-9596 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 68 tctgccaaaggagatttgccccgcaattca 97
||||||||||||||||||||| || |||||
Sbjct: 87 tctgccaaaggagatttgcccagcgattca 116
>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
Japonica Group
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 69 ctgccaaaggagatttgccccgcaat 94
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
