miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47019_ath-miR399e:pmrd
Length = 109
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 gaaagcattacagggcgaatcctctattggcagtggaagttgatgacccttatatgttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaagcattacagggcgaatcctctattggcagtggaagttgatgacccttatatgttat 60
Query: 61 tttctcatcattttcctctgccaaaggagatttgcctcgcaatgcttca 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttctcatcattttcctctgccaaaggagatttgcctcgcaatgcttca 109
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 ctctgccaaaggagatttgcctcgcaat 103
||||||||||||||||||||| ||||||
Sbjct: 63 ctctgccaaaggagatttgccccgcaat 90
>47018_ath-miR399d:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 ctctgccaaaggagatttgcctcgcaat 103
||||||||||||||||||||| ||||||
Sbjct: 67 ctctgccaaaggagatttgccccgcaat 94
>54881_vvi-miR399e:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 cctctgccaaaggagatttgcc 96
||||||||||||||||||||||
Sbjct: 78 cctctgccaaaggagatttgcc 99
>51747_ptc-miR399a:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcctcgcaat 103
||||||||||||||||||| ||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaat 115
>54494_sbi-miR399f:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 ctctgccaaaggagatttgcc 96
|||||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgcc 98
>48969_osa-miR399f:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 ctctgccaaaggagatttgcc 96
|||||||||||||||||||||
Sbjct: 84 ctctgccaaaggagatttgcc 104
>48377_bna-miR399:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 ctctgccaaaggagatttgcc 96
|||||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgcc 98
>47020_ath-miR399f:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 ctctgccaaaggagatttgcc 96
|||||||||||||||||||||
Sbjct: 85 ctctgccaaaggagatttgcc 105
>54493_sbi-miR399e:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcctcgcaatgc 105
||||||||||||||||||| |||||||
Sbjct: 86 ctgccaaaggagatttgcccagcaatgc 113
>51756_ptc-miR399j:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 cctctgccaaaggagatttg 94
||||||||||||||||||||
Sbjct: 78 cctctgccaaaggagatttg 97
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcctcgcaatgc 105
||||||||||||||||||| |||||||
Sbjct: 84 ctgccaaaggagatttgcccagcaatgc 111
>48970_osa-miR399g:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tctgccaaaggagatttgcc 96
||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgcc 106
>48968_osa-miR399e:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcctcgcaatgc 105
||||||||||||||||||| |||||||
Sbjct: 87 ctgccaaaggagatttgcccagcaatgc 114
>48754_mtr-miR399e:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tctgccaaaggagatttgcc 96
||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgcc 112
>48750_mtr-miR399a:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tctgccaaaggagatttgcc 96
||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgcc 112
>47015_ath-miR399a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tctgccaaaggagatttgcc 96
||||||||||||||||||||
Sbjct: 91 tctgccaaaggagatttgcc 110
