miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC004481.3/13991-14099 3702:Arabidopsis thaliana
(thale cress)
Length = 109
Score = 216 bits (109), Expect = 4e-56
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 gaaagcattacagggcgaatcctctattggcagtggaagttgatgacccttatatgttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaagcattacagggcgaatcctctattggcagtggaagttgatgacccttatatgttat 60
Query: 61 tttctcatcattttcctctgccaaaggagatttgcctcgcaatgcttca 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttctcatcattttcctctgccaaaggagatttgcctcgcaatgcttca 109
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 ctctgccaaaggagatttgcctcgcaat 103
||||||||||||||||||||| ||||||
Sbjct: 67 ctctgccaaaggagatttgccccgcaat 94
>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcctcgcaat 103
||||||||||||||||||| ||||||
Sbjct: 105 ctgccaaaggagatttgccccgcaat 130
>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcctcgcaat 103
||||||||||||||||||| ||||||
Sbjct: 106 ctgccaaaggagatttgccccgcaat 131
>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcctcgcaat 103
||||||||||||||||||| ||||||
Sbjct: 106 ctgccaaaggagatttgccccgcaat 131
>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcctcgcaat 103
||||||||||||||||||| ||||||
Sbjct: 88 ctgccaaaggagatttgccccgcaat 113
>RF00445;mir-399;AARH01002119.1/17334-17454 3694:Populus trichocarpa
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcctcgcaat 103
||||||||||||||||||| ||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaat 115
>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
(castor bean)
Length = 108
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcctcgcaat 103
||||||||||||||||||| ||||||
Sbjct: 77 ctgccaaaggagatttgccccgcaat 102
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 cctctgccaaaggagatttgcc 96
||||||||||||||||||||||
Sbjct: 82 cctctgccaaaggagatttgcc 103
