miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>39889_aly-MIR399f:mirbase
          Length = 167

 Score =  192 bits (97), Expect = 4e-50
 Identities = 109/113 (96%)
 Strand = Plus / Plus

                                                                       
Query: 6   cattacagggcaagatcaccattggcagagatctattacttcattcttgcatcatatgca 65
           ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 30  cattacagggcaagatcaccattggcagaaatctattacttcattcttgcataatatgca 89

                                                                
Query: 66  taaatgtttgtggtgagctctctgccaaaggagatttgcccggtaattctctt 118
           | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 90  ttaatgtttgtggtgagctctctgccaaaggagatttgccctgtaattctctt 142




>39884_aly-MIR399a:mirbase
          Length = 162

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 78  gtgagctctctgccaaaggagatttgcccggtaattct 115
           ||||| ||||||||||||||||||||||||||||||||
Sbjct: 103 gtgagttctctgccaaaggagatttgcccggtaattct 140




>41147_tcc-MIR399b:mirbase
          Length = 135

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 74  tgtggtgagctctctgccaaaggagatttgcccggtaattct 115
           ||||||| || |||||||||||||||||||||||| ||||||
Sbjct: 81  tgtggtgtgccctctgccaaaggagatttgcccggcaattct 122



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 4  tgcattacagggcaagatcaccattggcag 33
          ||||||||||||||||||  ||||||||||
Sbjct: 14 tgcattacagggcaagatttccattggcag 43




>40299_bna-MIR399:mirbase
          Length = 102

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 72  tttgtggtgagctctctgccaaaggagatttgcccggt 109
           ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 65  tttgtagtgagttctctgccaaaggagatttgcccggt 102




>39893_aly-MIR399j:mirbase
          Length = 136

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 88  tgccaaaggagatttgcccggtaattct 115
           ||||||||||||||||||||||||||||
Sbjct: 96  tgccaaaggagatttgcccggtaattct 123



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 3  atgcattacagggcaagatcaccattggcag 33
          |||||||||||||||||||| | ||||||||
Sbjct: 11 atgcattacagggcaagatctctattggcag 41




>41672_vvi-MIR399e:mirbase
          Length = 112

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 85  ctctgccaaaggagatttgcccggtaattct 115
           |||||||||||||||||||||||| ||||||
Sbjct: 79  ctctgccaaaggagatttgcccggcaattct 109




>41149_tcc-MIR399d:mirbase
          Length = 136

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 86  tctgccaaaggagatttgcccggtaattct 115
           ||||||||||||||||||||||| ||||||
Sbjct: 94  tctgccaaaggagatttgcccggcaattct 123




>40092_ath-MIR399a:mirbase
          Length = 123

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 86  tctgccaaaggagatttgcccggtaattct 115
           ||||||||||||||||||||| ||||||||
Sbjct: 91  tctgccaaaggagatttgccctgtaattct 120




>41246_csi-MIR399a:mirbase
          Length = 155

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 86  tctgccaaaggagatttgcccggtaattc 114
           ||||||||||||||||||||||| |||||
Sbjct: 112 tctgccaaaggagatttgcccggcaattc 140




>39891_aly-MIR399h:mirbase
          Length = 106

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 88  tgccaaaggagatttgcccggtaat 112
           |||||||||||||||||||||||||
Sbjct: 82  tgccaaaggagatttgcccggtaat 106




>42046_osa-MIR399f:mirbase
          Length = 117

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 83  ctctctgccaaaggagatttgccc 106
           ||||||||||||||||||||||||
Sbjct: 82  ctctctgccaaaggagatttgccc 105




>41450_ptc-MIR399c:mirbase
          Length = 126

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 88  tgccaaaggagatttgcccggtaattct 115
           ||||||||||||||||||||| ||||||
Sbjct: 97  tgccaaaggagatttgcccggcaattct 124




>41449_ptc-MIR399b:mirbase
          Length = 126

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 88  tgccaaaggagatttgcccggtaattct 115
           ||||||||||||||||||||| ||||||
Sbjct: 97  tgccaaaggagatttgcccggcaattct 124




>40095_ath-MIR399d:mirbase
          Length = 100

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 84  tctctgccaaaggagatttgccc 106
           |||||||||||||||||||||||
Sbjct: 66  tctctgccaaaggagatttgccc 88




>39887_aly-MIR399d:mirbase
          Length = 135

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 84  tctctgccaaaggagatttgccc 106
           |||||||||||||||||||||||
Sbjct: 80  tctctgccaaaggagatttgccc 102




>42594_sbi-MIR399f:mirbase
          Length = 120

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 85  ctctgccaaaggagatttgccc 106
           ||||||||||||||||||||||
Sbjct: 78  ctctgccaaaggagatttgccc 99




>41674_vvi-MIR399g:mirbase
          Length = 113

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 81  agctctctgccaaaggagatttgccc 106
           ||||| ||||||||||||||||||||
Sbjct: 76  agctcactgccaaaggagatttgccc 101




>41457_ptc-MIR399j:mirbase
          Length = 112

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 4  tgcattacagggcaagatcaccattggcag 33
          ||||||||||||||||| | ||||||||||
Sbjct: 1  tgcattacagggcaagacctccattggcag 30



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 85  ctctgccaaaggagatttgcccgg 108
           ||||||||||||||||||| ||||
Sbjct: 79  ctctgccaaaggagatttgtccgg 102




>41448_ptc-MIR399a:mirbase
          Length = 120

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 81  agctctctgccaaaggagatttgccc 106
           ||||| ||||||||||||||||||||
Sbjct: 84  agctcgctgccaaaggagatttgccc 109




>41153_tcc-MIR399h:mirbase
          Length = 117

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 81  agctctctgccaaaggagatttgccc 106
           ||||| ||||||||||||||||||||
Sbjct: 70  agctcactgccaaaggagatttgccc 95




>40384_rco-MIR399b:mirbase
          Length = 106

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  ctgccaaaggagatttgcccgg 108
           ||||||||||||||||||||||
Sbjct: 80  ctgccaaaggagatttgcccgg 101




>42047_osa-MIR399g:mirbase
          Length = 119

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 86  tctgccaaaggagatttgccc 106
           |||||||||||||||||||||
Sbjct: 87  tctgccaaaggagatttgccc 107




>41148_tcc-MIR399c:mirbase
          Length = 141

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 82  gctctctgccaaaggagatttgccc 106
           |||||||||||| ||||||||||||
Sbjct: 95  gctctctgccaatggagatttgccc 119




>40736_mtr-MIR399f:mirbase
          Length = 104

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 86  tctgccaaaggagatttgccc 106
           |||||||||||||||||||||
Sbjct: 77  tctgccaaaggagatttgccc 97




>40735_mtr-MIR399e:mirbase
          Length = 134

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 86  tctgccaaaggagatttgccc 106
           |||||||||||||||||||||
Sbjct: 93  tctgccaaaggagatttgccc 113




>40731_mtr-MIR399a:mirbase
          Length = 134

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 86  tctgccaaaggagatttgccc 106
           |||||||||||||||||||||
Sbjct: 93  tctgccaaaggagatttgccc 113




>40387_rco-MIR399e:mirbase
          Length = 108

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 86  tctgccaaaggagatttgccc 106
           |||||||||||||||||||||
Sbjct: 81  tctgccaaaggagatttgccc 101




>40385_rco-MIR399c:mirbase
          Length = 96

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 88  tgccaaaggagatttgcccgg 108
           |||||||||||||||||||||
Sbjct: 71  tgccaaaggagatttgcccgg 91




>40096_ath-MIR399e:mirbase
          Length = 109

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 85  ctctgccaaaggagatttgcc 105
           |||||||||||||||||||||
Sbjct: 76  ctctgccaaaggagatttgcc 96




>39888_aly-MIR399e:mirbase
          Length = 191

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 85  ctctgccaaaggagatttgcc 105
           |||||||||||||||||||||
Sbjct: 115 ctctgccaaaggagatttgcc 135




>42593_sbi-MIR399e:mirbase
          Length = 126

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  ctgccaaaggagatttgccc 106
           ||||||||||||||||||||
Sbjct: 86  ctgccaaaggagatttgccc 105




>42045_osa-MIR399e:mirbase
          Length = 118

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  ctgccaaaggagatttgccc 106
           ||||||||||||||||||||
Sbjct: 87  ctgccaaaggagatttgccc 106




>40737_mtr-MIR399g:mirbase
          Length = 104

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  ctgccaaaggagatttgccc 106
           ||||||||||||||||||||
Sbjct: 78  ctgccaaaggagatttgccc 97




>39892_aly-MIR399i:mirbase
          Length = 127

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  ctgccaaaggagatttgccc 106
           ||||||||||||||||||||
Sbjct: 91  ctgccaaaggagatttgccc 110




>39890_aly-MIR399g:mirbase
          Length = 157

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  ctgccaaaggagatttgccc 106
           ||||||||||||||||||||
Sbjct: 110 ctgccaaaggagatttgccc 129