miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47020_ath-miR399f:pmrd
Length = 118
Score = 234 bits (118), Expect = 1e-62
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 atatgcattacagggcaagatcaccattggcagagatctattacttcattcttgcatcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatgcattacagggcaagatcaccattggcagagatctattacttcattcttgcatcat 60
Query: 61 atgcataaatgtttgtggtgagctctctgccaaaggagatttgcccggtaattctctt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgcataaatgtttgtggtgagctctctgccaaaggagatttgcccggtaattctctt 118
>48377_bna-miR399:pmrd
Length = 102
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 72 tttgtggtgagctctctgccaaaggagatttgcccggt 109
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 65 tttgtagtgagttctctgccaaaggagatttgcccggt 102
>54881_vvi-miR399e:pmrd
Length = 112
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 85 ctctgccaaaggagatttgcccggtaattct 115
|||||||||||||||||||||||| ||||||
Sbjct: 79 ctctgccaaaggagatttgcccggcaattct 109
>47015_ath-miR399a:pmrd
Length = 123
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 86 tctgccaaaggagatttgcccggtaattct 115
||||||||||||||||||||| ||||||||
Sbjct: 91 tctgccaaaggagatttgccctgtaattct 120
>51749_ptc-miR399c:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 88 tgccaaaggagatttgcccggtaattct 115
||||||||||||||||||||| ||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattct 124
>51748_ptc-miR399b:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 88 tgccaaaggagatttgcccggtaattct 115
||||||||||||||||||||| ||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattct 124
>48969_osa-miR399f:pmrd
Length = 117
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 ctctctgccaaaggagatttgccc 106
||||||||||||||||||||||||
Sbjct: 82 ctctctgccaaaggagatttgccc 105
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 84 tctctgccaaaggagatttgccc 106
|||||||||||||||||||||||
Sbjct: 62 tctctgccaaaggagatttgccc 84
>47018_ath-miR399d:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 84 tctctgccaaaggagatttgccc 106
|||||||||||||||||||||||
Sbjct: 66 tctctgccaaaggagatttgccc 88
>54883_vvi-miR399g:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 agctctctgccaaaggagatttgccc 106
||||| ||||||||||||||||||||
Sbjct: 76 agctcactgccaaaggagatttgccc 101
>54494_sbi-miR399f:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ctctgccaaaggagatttgccc 106
||||||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgccc 99
>51756_ptc-miR399j:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 tgcattacagggcaagatcaccattggcag 33
||||||||||||||||| | ||||||||||
Sbjct: 1 tgcattacagggcaagacctccattggcag 30
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 85 ctctgccaaaggagatttgcccgg 108
||||||||||||||||||| ||||
Sbjct: 79 ctctgccaaaggagatttgtccgg 102
>51747_ptc-miR399a:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 agctctctgccaaaggagatttgccc 106
||||| ||||||||||||||||||||
Sbjct: 84 agctcgctgccaaaggagatttgccc 109
>52630_ptc-miRf10808-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 88 tgccaaaggagatttgcccgg 108
|||||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgcccgg 5
>51890_ptc-miRf10068-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 88 tgccaaaggagatttgcccgg 108
|||||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgcccgg 5
>48970_osa-miR399g:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 tctgccaaaggagatttgccc 106
|||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgccc 107
>48754_mtr-miR399e:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 tctgccaaaggagatttgccc 106
|||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgccc 113
>48750_mtr-miR399a:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 tctgccaaaggagatttgccc 106
|||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgccc 113
>47019_ath-miR399e:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 ctctgccaaaggagatttgcc 105
|||||||||||||||||||||
Sbjct: 76 ctctgccaaaggagatttgcc 96
>54493_sbi-miR399e:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 ctgccaaaggagatttgccc 106
||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgccc 105
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 ctgccaaaggagatttgccc 106
||||||||||||||||||||
Sbjct: 84 ctgccaaaggagatttgccc 103
>48968_osa-miR399e:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 ctgccaaaggagatttgccc 106
||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgccc 106
