miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 234 bits (118), Expect = 2e-61
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 atatgcattacagggcaagatcaccattggcagagatctattacttcattcttgcatcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatgcattacagggcaagatcaccattggcagagatctattacttcattcttgcatcat 60
Query: 61 atgcataaatgtttgtggtgagctctctgccaaaggagatttgcccggtaattctctt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgcataaatgtttgtggtgagctctctgccaaaggagatttgcccggtaattctctt 118
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 85 ctctgccaaaggagatttgcccggtaattct 115
|||||||||||||||||||||||| ||||||
Sbjct: 83 ctctgccaaaggagatttgcccggcaattct 113
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 86 tctgccaaaggagatttgcccggtaattct 115
||||||||||||||||||||| ||||||||
Sbjct: 91 tctgccaaaggagatttgccctgtaattct 120
>RF00445;mir-399;AASG02004610.1/1319-1202 3988:Ricinus communis
(castor bean)
Length = 118
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 atgcattacagggcaagatcaccattggca 32
|||||||||||||||| |||||||||||||
Sbjct: 3 atgcattacagggcaaaatcaccattggca 32
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 87 ctgccaaaggagatttgcccggtaattct 115
|||||||||||||||||||| ||||||||
Sbjct: 86 ctgccaaaggagatttgcccagtaattct 114
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 87 ctgccaaaggagatttgcccggtaattct 115
|||||||||||||||||||||| ||||||
Sbjct: 63 ctgccaaaggagatttgcccggcaattct 91
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 82 gctctctgccaaaggagatttgcccggtaattc 114
|||| |||||||||||||||||||||| |||||
Sbjct: 73 gctcactgccaaaggagatttgcccggcaattc 105
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 88 tgccaaaggagatttgcccggtaattct 115
||||||||||||||||||||| ||||||
Sbjct: 92 tgccaaaggagatttgcccggcaattct 119
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 ctctctgccaaaggagatttgccc 106
||||||||||||||||||||||||
Sbjct: 82 ctctctgccaaaggagatttgccc 105
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 84 tctctgccaaaggagatttgccc 106
|||||||||||||||||||||||
Sbjct: 66 tctctgccaaaggagatttgccc 88
>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 agctctctgccaaaggagatttgccc 106
||||| ||||||||||||||||||||
Sbjct: 99 agctcactgccaaaggagatttgccc 124
>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 agctctctgccaaaggagatttgccc 106
||||| ||||||||||||||||||||
Sbjct: 100 agctcactgccaaaggagatttgccc 125
>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 agctctctgccaaaggagatttgccc 106
||||| ||||||||||||||||||||
Sbjct: 100 agctcactgccaaaggagatttgccc 125
>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 agctctctgccaaaggagatttgccc 106
||||| ||||||||||||||||||||
Sbjct: 82 agctcactgccaaaggagatttgccc 107
>RF00445;mir-399;AARH01002119.1/17334-17454 3694:Populus trichocarpa
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 agctctctgccaaaggagatttgccc 106
||||| ||||||||||||||||||||
Sbjct: 84 agctcgctgccaaaggagatttgccc 109
>RF00445;mir-399;AARH01004856.1/135040-135154 3694:Populus
trichocarpa
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 tgcattacagggcaagatcaccattggcag 33
||||||||||||||||| | ||||||||||
Sbjct: 4 tgcattacagggcaagacctccattggcag 33
>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
(castor bean)
Length = 108
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 agctctctgccaaaggagatttgccc 106
||||| ||||||||||||||||||||
Sbjct: 71 agctcactgccaaaggagatttgccc 96
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 86 tctgccaaaggagatttgcccggtaattct 115
||||||||||||||||||||| | ||||||
Sbjct: 88 tctgccaaaggagatttgcccagcaattct 117
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 ctgccaaaggagatttgcccggtaattctc 116
|||||||||||||||||||| | |||||||
Sbjct: 85 ctgccaaaggagatttgcccagcaattctc 114
>RF00445;mir-399;AM470981.2/5848-5733 29760:Vitis vinifera
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 agctctctgccaaaggagatttgccc 106
||||| ||||||||||||||||||||
Sbjct: 79 agctcactgccaaaggagatttgccc 104
>RF00445;mir-399;AM467681.2/20491-20605 29760:Vitis vinifera
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 agctctctgccaaaggagatttgccc 106
||||| ||||||||||||||||||||
Sbjct: 78 agctcactgccaaaggagatttgccc 103
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ctctgccaaaggagatttgccc 106
||||||||||||||||||||||
Sbjct: 68 ctctgccaaaggagatttgccc 89
