miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47022_ath-miR401:pmrd
Length = 250
Score = 496 bits (250), Expect = e-141
Identities = 250/250 (100%)
Strand = Plus / Plus
Query: 1 tatatagaccctaaaaacgtccagggactaataatgcaaatatggaaatcttctggggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatatagaccctaaaaacgtccagggactaataatgcaaatatggaaatcttctggggca 60
Query: 61 aacttgagcttctgaaaacttgaaagcgtttagggtttttgctgggccgaaactggtgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacttgagcttctgaaaacttgaaagcgtttagggtttttgctgggccgaaactggtgtc 120
Query: 121 gaccgacaccaagagtgtgtcgctcgacactcatcgctgattcctgaaccaaaatcgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaccgacaccaagagtgtgtcgctcgacactcatcgctgattcctgaaccaaaatcgttc 180
Query: 181 ttagtttccttttccttagtttttgctccaaaatgtctccttatctccattgttgtccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttagtttccttttccttagtttttgctccaaaatgtctccttatctccattgttgtccca 240
Query: 241 ttgcatagaa 250
||||||||||
Sbjct: 241 ttgcatagaa 250
>47088_ath-miR855:pmrd
Length = 272
Score = 280 bits (141), Expect = 5e-76
Identities = 195/213 (91%)
Strand = Plus / Minus
Query: 1 tatatagaccctaaaaacgtccagggactaataatgcaaatatggaaatcttctggggca 60
||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||
Sbjct: 213 tatatagaccctaaaaacgtccacggactaataatgcaaataatgaaatcttctagggca 154
Query: 61 aacttgagcttctgaaaacttgaaagcgtttagggtttttgctgggccgaaactggtgtc 120
|||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 153 aacttgagctcttgtaaactcgaaagcgtctagggtttttgctgggccgaaactggtgtc 94
Query: 121 gaccgacaccaagagtgtgtcgctcgacactcatcgctgattcctgaaccaaaatcgttc 180
|| ||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||| |
Sbjct: 93 gatcgacaccaagagtgtgtcgatcgacactcctcgctaattccagaaccaaaatcgtcc 34
Query: 181 ttagtttccttttccttagtttttgctccaaaa 213
||| |||||||||||||| |||||||||||||
Sbjct: 33 ttatcttccttttccttagcttttgctccaaaa 1
>48258_ath-miRf11158-akr:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 116 gtgtcgaccgacaccaagagtgtgtcgctcgacac 150
||||||||||||||||| || |||||| |||||||
Sbjct: 36 gtgtcgaccgacaccaacagggtgtcgatcgacac 2
>47400_ath-miRf10300-akr:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 8e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 119 tcgaccgacaccaagagtgtgtcgctcgacac 150
|||||||||||||| | ||||||| |||||||
Sbjct: 42 tcgaccgacaccaataatgtgtcgatcgacac 11
