miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47025_ath-miR404:pmrd
Length = 150
Score = 297 bits (150), Expect = 1e-81
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 1 tagcatgttcgtttcattaacgctggcggttgcggcagcggctgcggtagcggtggcggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagcatgttcgtttcattaacgctggcggttgcggcagcggctgcggtagcggtggcggc 60
Query: 61 aaacactaccgcaggttgttgttcgttttgttgccgcagacgctgccgcagccgctgccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaacactaccgcaggttgttgttcgttttgttgccgcagacgctgccgcagccgctgccg 120
Query: 121 caaccgcaggtttctttgttcgtttcgacg 150
||||||||||||||||||||||||||||||
Sbjct: 121 caaccgcaggtttctttgttcgtttcgacg 150
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 101 cgctgccgcagccgctgccgcaaccgc 127
|||| ||||||||||||||||||||||
Sbjct: 52 cgctaccgcagccgctgccgcaaccgc 26
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 26 gcggttgcggcagcggctgcggtagcg 52
|||||||||||||||||||||| ||||
Sbjct: 127 gcggttgcggcagcggctgcggcagcg 101
>47110_ath-miRf10010-akr:pmrd
Length = 102
Score = 202 bits (102), Expect = 5e-53
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 26 gcggttgcggcagcggctgcggtagcggtggcggcaaacactaccgcaggttgttgttcg 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gcggttgcggcagcggctgcggtagcggtggcggcaaacactaccgcaggttgttgttcg 43
Query: 86 ttttgttgccgcagacgctgccgcagccgctgccgcaaccgc 127
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 ttttgttgccgcagacgctgccgcagccgctgccgcaaccgc 1
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 gcggttgcggcagcggctgcggtagcg 52
|||||||||||||||||||||| ||||
Sbjct: 1 gcggttgcggcagcggctgcggcagcg 27
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 101 cgctgccgcagccgctgccgcaaccgc 127
|||| ||||||||||||||||||||||
Sbjct: 76 cgctaccgcagccgctgccgcaaccgc 102
>47210_ath-miRf10110-akr:pmrd
Length = 93
Score = 79.8 bits (40), Expect = 5e-16
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 62 aacactaccgcaggttgttgttcgttttgttgccgcagacgctgccgcagccgctgccgc 121
|||||| |||||||||||||||||||| || ||||| ||| |||||||||||||| |||
Sbjct: 68 aacactgccgcaggttgttgttcgtttcgtcgccgccaacgttgccgcagccgctgtcgc 9
Query: 122 aaccgcag 129
||||||||
Sbjct: 8 aaccgcag 1
>47533_ath-miRf10433-akr:pmrd
Length = 95
Score = 69.9 bits (35), Expect = 5e-13
Identities = 77/91 (84%), Gaps = 5/91 (5%)
Strand = Plus / Plus
Query: 32 gcggcagcggctgcggtagcggtggcggcaa-----acactaccgcaggttgttgttcgt 86
||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||
Sbjct: 1 gcggcagcggctgcggttgcggcagcggcaacggtaacactgccgcaggttgttgttcgt 60
Query: 87 tttgttgccgcagacgctgccgcagccgctg 117
|| || ||||| ||| ||||||||||||||
Sbjct: 61 ttcgtcgccgccaacgttgccgcagccgctg 91
