miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47026_ath-miR405a:pmrd
Length = 157
Score = 311 bits (157), Expect = 8e-86
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 1 tcaaaatgggtaacccaacccaacccaactcataatcaaatgagtttatgattaaatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaaaatgggtaacccaacccaacccaactcataatcaaatgagtttatgattaaatgag 60
Query: 61 ttatgggttgacccaactcattttgttaaatgagttgggtctaacccataactcatttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttatgggttgacccaactcattttgttaaatgagttgggtctaacccataactcatttca 120
Query: 121 tttgatgggttgagttgttaaatgggttaaccattta 157
|||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgatgggttgagttgttaaatgggttaaccattta 157
Score = 67.9 bits (34), Expect = 2e-12
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 54 aaatgagttatgggtt-gacccaactcattttgttaaatgagttgggtctaacccataac 112
|||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 118 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtc-aacccataac 60
Query: 113 tcattt 118
||||||
Sbjct: 59 tcattt 54
>47027_ath-miR405b:pmrd
Length = 124
Score = 214 bits (108), Expect = 1e-56
Identities = 121/124 (97%), Gaps = 1/124 (0%)
Strand = Plus / Minus
Query: 28 actcataatcaaatgagtttatgattaaatgagttatgggtt-gacccaactcattttgt 86
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 124 actcataatcaaatgagtttataattaaatgagttatgggttagacccaactcattttgt 65
Query: 87 taaatgagttgggtctaacccataactcatttcatttgatgggttgagttgttaaatggg 146
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 64 taaatgagttgggtctaacccataactcatttcatttgatgggttgaattgttaaatggg 5
Query: 147 ttaa 150
||||
Sbjct: 4 ttaa 1
Score = 83.8 bits (42), Expect = 4e-17
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 54 aaatgagttatgggtt-gacccaactcattttgttaaatgagttgggtctaacccataac 112
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
Query: 113 tcattt 118
||||||
Sbjct: 93 tcattt 98
>47028_ath-miR405d:pmrd
Length = 86
Score = 129 bits (65), Expect = 7e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 54 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 72
Query: 114 cattt 118
|||||
Sbjct: 73 cattt 77
Score = 109 bits (55), Expect = 6e-25
Identities = 81/87 (93%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 45 tttatgattaaatgagttatgggtt-gacccaactcattttgttaaatgagttgggtcta 103
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct: 86 tttatgattaaatgagttatgggttagacccaactcatttaacaaaatgagttgggtc-a 28
Query: 104 acccataactcatttcatttgatgggt 130
|||||||||||||||||||||||||||
Sbjct: 27 acccataactcatttcatttgatgggt 1
>47423_ath-miRf10323-akr:pmrd
Length = 68
Score = 101 bits (51), Expect = 2e-22
Identities = 64/67 (95%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 52 ttaaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataa 111
|||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 68 ttaaatgagttatgggatgacccaactcattttgttaaatgggttgggtc-aacccataa 10
Query: 112 ctcattt 118
|||||||
Sbjct: 9 ctcattt 3
Score = 69.9 bits (35), Expect = 5e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 52 ttaaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataa 111
|||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||
Sbjct: 1 ttaaatgagttatgggttgacccaacccatttaacaaaatgagttgggtc-atcccataa 59
Query: 112 ctcattt 118
|||||||
Sbjct: 60 ctcattt 66
