miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00768;MIR405;AL161513.2/66534-66413 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 174 bits (88), Expect = 2e-43
Identities = 113/120 (94%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 31 cataatcaaatgagtttatgattaaatgagttatgggttgacccaactcattttgttaaa 90
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cataatcaaatgagtttagggttaaatgagttatgggttgacccaactcattttgttaaa 60
Query: 91 tgagttgggtctaacccataactcatttcatttgatgggttgagttgttaaatgggttaa 150
|| |||||||| |||| |||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 59 tgggttgggtc-aacctataacttatttaatttgatgggttgagttgttaaatgggttaa 1
Score = 63.9 bits (32), Expect = 6e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 51 attaaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccata 110
||||||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 30 attaaataagttataggttgacccaacccatttaacaaaatgagttgggtc-aacccata 88
Query: 111 actcattt 118
||||||||
Sbjct: 89 actcattt 96
>RF00768;MIR405;AL161581.2/10009-9888 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 161 bits (81), Expect = 3e-39
Identities = 94/97 (96%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 54 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 113
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 96 aaatgagttatgggttgacccaactcattttgttaaatgaattgggtc-aacccataact 38
Query: 114 catttcatttgatgggttgagttgttaaatgggttaa 150
||||| |||||||||||||||||||||||||||||||
Sbjct: 37 catttaatttgatgggttgagttgttaaatgggttaa 1
Score = 79.8 bits (40), Expect = 1e-14
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 51 attaaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccata 110
|||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct: 30 attaaatgagttatgggttgacccaattcatttaacaaaatgagttgggtc-aacccata 88
Query: 111 actcattt 118
||||||||
Sbjct: 89 actcattt 96
>RF00768;MIR405;AC022492.5/19374-19253 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 157 bits (79), Expect = 5e-38
Identities = 107/115 (93%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 28 actcataatcaaatgagtttatgattaaatgagttatgggttgacccaactcattttgtt 87
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 122 actcataatcaaatgagtttatgattaaatgagttataggttgacccaacccatttaata 63
Query: 88 aaatgagttgggtctaacccataactcatttcatttgatgggttgagttgttaaa 142
|||||||||| ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 62 aaatgagttgcgtc-aacccataactcatttaatttgatgggttgagttgttaaa 9
Score = 87.7 bits (44), Expect = 4e-17
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 51 attaaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccata 110
|||||||||||||||||||||| ||||||||||| ||||||| |||||||| |||| |||
Sbjct: 30 attaaatgagttatgggttgacgcaactcattttattaaatgggttgggtc-aacctata 88
Query: 111 actcattt 118
||||||||
Sbjct: 89 actcattt 96
>RF00768;MIR405;AL162508.1/25569-25690 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 139 bits (70), Expect = 1e-32
Identities = 101/110 (91%), Gaps = 1/110 (0%)
Strand = Plus / Minus
Query: 32 ataatcaaatgagtttatgattaaatgagttatgggttgacccaactcattttgttaaat 91
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ataatcaaatgagtttaagaataaatgagttatgggttgacccaactcattttgttaaat 59
Query: 92 gagttgggtctaacccataactcatttcatttgatgggttgagttgttaa 141
| |||||||| |||| ||||||||||| |||| |||| ||||| ||||||
Sbjct: 58 gtgttgggtc-aacctataactcatttaatttaatggtttgagatgttaa 10
Score = 71.9 bits (36), Expect = 2e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 51 attaaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccata 110
|||||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 30 attaaatgagttataggttgacccaacacatttaacaaaatgagttgggtc-aacccata 88
Query: 111 actcattt 118
||||||||
Sbjct: 89 actcattt 96
>RF00768;MIR405;AC022522.2/78968-79086 3702:Arabidopsis thaliana
(thale cress)
Length = 119
Score = 125 bits (63), Expect = 2e-28
Identities = 85/91 (93%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 28 actcataatcaaatgagtttatgattaaatgagttatgggttgacccaactcattttgtt 87
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 119 actcataatcaaatgagtttaaggttaaatgagttatgggttgacccaactcattttgtt 60
Query: 88 aaatgagttgggtctaacccataactcattt 118
|||| ||||||||| ||| |||||||||||
Sbjct: 59 aaataggttgggtct-acctataactcattt 30
Score = 56.0 bits (28), Expect = 1e-07
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 51 attaaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccata 110
|||||||||||||| ||| |||||||| |||| |||||||||||||| ||||||||
Sbjct: 27 attaaatgagttataggtagacccaacctatttaacaaaatgagttgggtc-aacccata 85
Query: 111 actcattt 118
||||||||
Sbjct: 86 actcattt 93
>RF00768;MIR405;AF272705.1/85454-85342 3702:Arabidopsis thaliana
(thale cress)
Length = 113
Score = 105 bits (53), Expect = 2e-22
Identities = 98/113 (86%), Gaps = 10/113 (8%)
Strand = Plus / Minus
Query: 28 actcataatcaaatgagtttatgattaaatgagttatgggttgacccaactcattttgtt 87
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 113 actcataatcaaatgagtttaatgttaaatgagttatgggttgacccatctcatttt--- 57
Query: 88 aaatgagttgggtctaacccataactcatttcatttgatgggttgagttgtta 140
|||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 56 ------gttgggtc-aacccataactcatttcatttgatgggttaagttgtta 11
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatgagttatgggttgacccaac 77
||||||||||||||||||||||||
Sbjct: 33 aaatgagttatgggttgacccaac 56
>RF00768;MIR405;AC002534.1/7073-7194 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 95.6 bits (48), Expect = 2e-19
Identities = 91/104 (87%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 28 actcataatcaaatgagtttatgattaaatgagttatgggttgacccaactcattttgtt 87
||||||||| ||||||||||| ||||||| ||||||||||||||||||| ||||
Sbjct: 122 actcataattaaatgagtttagaattaaataagttatgggttgacccaacctatttaaca 63
Query: 88 aaatgagttgggtctaacccataactcatttcatttgatgggtt 131
||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 62 taatgagttgggtc-aacccataactcatttaatttgatgggtt 20
Score = 87.7 bits (44), Expect = 4e-17
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 51 attaaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccata 110
|||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 30 attaaatgagttatgggttgacccaactcattatgttaaataggttgggtc-aacccata 88
Query: 111 actcattt 118
||| ||||
Sbjct: 89 acttattt 96
>RF00768;MIR405;AC006951.6/55866-55745 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 93.7 bits (47), Expect = 7e-19
Identities = 105/123 (85%), Gaps = 1/123 (0%)
Strand = Plus / Minus
Query: 28 actcataatcaaatgagtttatgattaaatgagttatgggttgacccaactcattttgtt 87
|||||||||||||| |||||| | ||||||||||||||| ||||| |||| |||||
Sbjct: 122 actcataatcaaataagtttagggttaaatgagttatggattgacacaacccatttaaca 63
Query: 88 aaatgagttgggtctaacccataactcatttcatttgatgggttgagttgttaaatgggt 147
||||| |||| ||| || ||||||||||||| ||||||||| || | |||||||||||||
Sbjct: 62 aaatgggttgtgtc-aatccataactcatttaatttgatggattaaattgttaaatgggt 4
Query: 148 taa 150
|||
Sbjct: 3 taa 1
Score = 71.9 bits (36), Expect = 2e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 51 attaaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccata 110
|||||||||||||||| ||||| |||| |||||||||||||| |||| ||| || |||||
Sbjct: 30 attaaatgagttatggattgacacaacccattttgttaaatgggttgtgtc-aatccata 88
Query: 111 actcattt 118
||||||||
Sbjct: 89 actcattt 96
>RF00768;MIR405;AP002059.1/10990-10861 3702:Arabidopsis thaliana
(thale cress)
Length = 130
Score = 73.8 bits (37), Expect = 6e-13
Identities = 88/101 (87%), Gaps = 3/101 (2%)
Strand = Plus / Minus
Query: 52 ttaaatgagtt-atgggttgacccaactcattttgttaaatgagttgggtctaacccat- 109
||||||||||| ||| |||||||||| |||||| | |||||| ||||||| ||| |||
Sbjct: 100 ttaaatgagttcatgagttgacccaattcatttaataaaatgaattgggtc-aactcatg 42
Query: 110 aactcatttcatttgatgggttgagttgttaaatgggttaa 150
||||||||| |||||||||||||| ||||||||||| ||||
Sbjct: 41 aactcatttaatttgatgggttgaattgttaaatggattaa 1
Score = 56.0 bits (28), Expect = 1e-07
Identities = 47/52 (90%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 51 attaaatgagtt-atgggttgacccaactcattttgttaaatgagttgggtc 101
|||||||||||| ||| |||||||||| ||||||| |||||||| |||||||
Sbjct: 30 attaaatgagttcatgagttgacccaattcattttattaaatgaattgggtc 81
