miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47027_ath-miR405b:pmrd
Length = 124
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 ttaacccatttaacaattcaacccatcaaatgaaatgagttatgggttagacccaactca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaacccatttaacaattcaacccatcaaatgaaatgagttatgggttagacccaactca 60
Query: 61 tttaacaaaatgagttgggtctaacccataactcatttaattataaactcatttgattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttaacaaaatgagttgggtctaacccataactcatttaattataaactcatttgattat 120
Query: 121 gagt 124
||||
Sbjct: 121 gagt 124
Score = 99.6 bits (50), Expect = 5e-22
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 98 aaatgagttatgggttagacccaactcattttgttaaatgagttgggtctaacccataac 39
Query: 93 tcattt 98
||||||
Sbjct: 38 tcattt 33
>47026_ath-miR405a:pmrd
Length = 157
Score = 214 bits (108), Expect = 1e-56
Identities = 121/124 (97%), Gaps = 1/124 (0%)
Strand = Plus / Minus
Query: 1 ttaacccatttaacaattcaacccatcaaatgaaatgagttatgggttagacccaactca 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ttaacccatttaacaactcaacccatcaaatgaaatgagttatgggttagacccaactca 91
Query: 61 tttaacaaaatgagttgggtctaacccataactcatttaattataaactcatttgattat 120
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 90 tttaacaaaatgagttgggtc-aacccataactcatttaatcataaactcatttgattat 32
Query: 121 gagt 124
||||
Sbjct: 31 gagt 28
Score = 83.8 bits (42), Expect = 3e-17
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 54 aaatgagttatgggtt-gacccaactcattttgttaaatgagttgggtctaacccataac 112
Query: 93 tcattt 98
||||||
Sbjct: 113 tcattt 118
>47028_ath-miR405d:pmrd
Length = 86
Score = 117 bits (59), Expect = 2e-27
Identities = 81/87 (93%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 21 acccatcaaatgaaatgagttatgggttagacccaactcatttaacaaaatgagttgggt 80
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 1 acccatcaaatgaaatgagttatgggtt-gacccaactcattttgttaaatgagttgggt 59
Query: 81 ctaacccataactcatttaattataaa 107
||||||||||||||||||||| |||||
Sbjct: 60 ctaacccataactcatttaatcataaa 86
Score = 115 bits (58), Expect = 8e-27
Identities = 65/66 (98%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 77 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtc-aacccataac 19
Query: 93 tcattt 98
||||||
Sbjct: 18 tcattt 13
>47423_ath-miRf10323-akr:pmrd
Length = 68
Score = 87.7 bits (44), Expect = 2e-18
Identities = 64/68 (94%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
|||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||
Sbjct: 3 aaatgagttatgggtt-gacccaacccatttaacaaaatgagttgggtc-atcccataac 60
Query: 93 tcatttaa 100
||||||||
Sbjct: 61 tcatttaa 68
Score = 56.0 bits (28), Expect = 6e-09
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
|||||||||||||| | |||||||||||||| ||||| |||||||| ||||||||||
Sbjct: 66 aaatgagttatgggat-gacccaactcattttgttaaatgggttgggtc-aacccataac 9
Query: 93 tcatttaa 100
||||||||
Sbjct: 8 tcatttaa 1
