miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00768;MIR405;AL161513.2/66534-66413 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 145 bits (73), Expect = 2e-34
Identities = 111/121 (91%), Gaps = 2/121 (1%)
Strand = Plus / Plus
Query: 1 ttaacccatttaacaattcaacccatcaaatgaaatgagttatgggttagacccaactca 60
|||||||||||||||| |||||||||||||| |||| |||||| |||| |||||||| ||
Sbjct: 1 ttaacccatttaacaactcaacccatcaaattaaataagttataggtt-gacccaaccca 59
Query: 61 tttaacaaaatgagttgggtctaacccataactcatttaattataaactcatttgattat 120
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 60 tttaacaaaatgagttgggtc-aacccataactcatttaaccctaaactcatttgattat 118
Query: 121 g 121
|
Sbjct: 119 g 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
|||||||||||||||| |||||||||||||| ||||| |||||||| |||| |||||
Sbjct: 96 aaatgagttatgggtt-gacccaactcattttgttaaatgggttgggtc-aacctataac 39
Query: 93 tcatttaatt 102
| ||||||||
Sbjct: 38 ttatttaatt 29
>RF00768;MIR405;AL161581.2/10009-9888 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 143 bits (72), Expect = 6e-34
Identities = 98/104 (94%), Gaps = 2/104 (1%)
Strand = Plus / Plus
Query: 1 ttaacccatttaacaattcaacccatcaaatgaaatgagttatgggttagacccaactca 60
|||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| |||
Sbjct: 1 ttaacccatttaacaactcaacccatcaaattaaatgagttatgggtt-gacccaattca 59
Query: 61 tttaacaaaatgagttgggtctaacccataactcatttaattat 104
||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 60 tttaacaaaatgagttgggtc-aacccataactcatttgattat 102
Score = 67.9 bits (34), Expect = 3e-11
Identities = 63/70 (90%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
|||||||||||||||| |||||||||||||| |||||| ||||||| ||||||||||
Sbjct: 96 aaatgagttatgggtt-gacccaactcattttgttaaatgaattgggtc-aacccataac 39
Query: 93 tcatttaatt 102
||||||||||
Sbjct: 38 tcatttaatt 29
>RF00768;MIR405;AC022492.5/19374-19253 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 127 bits (64), Expect = 4e-29
Identities = 105/116 (90%), Gaps = 2/116 (1%)
Strand = Plus / Plus
Query: 9 tttaacaattcaacccatcaaatgaaatgagttatgggttagacccaactcatttaacaa 68
|||||||| |||||||||||||| |||||||||||||||| ||| |||||||||| | |
Sbjct: 9 tttaacaactcaacccatcaaattaaatgagttatgggtt-gacgcaactcattttatta 67
Query: 69 aatgagttgggtctaacccataactcatttaattataaactcatttgattatgagt 124
|||| |||||||| |||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 68 aatgggttgggtc-aacctataactcatttaatcataaactcatttgattatgagt 122
Score = 75.8 bits (38), Expect = 1e-13
Identities = 64/70 (91%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
||||||||||| |||| |||||||| ||||||| ||||||||||| ||| ||||||||||
Sbjct: 96 aaatgagttataggtt-gacccaacccatttaataaaatgagttgcgtc-aacccataac 39
Query: 93 tcatttaatt 102
||||||||||
Sbjct: 38 tcatttaatt 29
>RF00768;MIR405;AL162508.1/25569-25690 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 109 bits (55), Expect = 9e-24
Identities = 93/103 (90%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 18 tcaacccatcaaatgaaatgagttatgggttagacccaactcatttaacaaaatgagttg 77
|||| |||| |||| ||||||||||| |||| |||||||| |||||||||||||||||||
Sbjct: 18 tcaaaccattaaattaaatgagttataggtt-gacccaacacatttaacaaaatgagttg 76
Query: 78 ggtctaacccataactcatttaattataaactcatttgattat 120
|||| ||||||||||||||||| | |||||||||||||||||
Sbjct: 77 ggtc-aacccataactcatttattcttaaactcatttgattat 118
Score = 60.0 bits (30), Expect = 7e-09
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
|||||||||||||||| |||||||||||||| ||||| |||||||| |||| |||||
Sbjct: 96 aaatgagttatgggtt-gacccaactcattttgttaaatgtgttgggtc-aacctataac 39
Query: 93 tcatttaatt 102
||||||||||
Sbjct: 38 tcatttaatt 29
>RF00768;MIR405;AC022522.2/78968-79086 3702:Arabidopsis thaliana
(thale cress)
Length = 119
Score = 103 bits (52), Expect = 5e-22
Identities = 84/92 (91%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 30 aaatgagttataggt-agacccaacctatttaacaaaatgagttgggtc-aacccataac 87
Query: 93 tcatttaattataaactcatttgattatgagt 124
|||||||| |||||||||||||||||||||
Sbjct: 88 tcatttaaccttaaactcatttgattatgagt 119
Score = 50.1 bits (25), Expect = 7e-06
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
|||||||||||||||| |||||||||||||| |||| ||||||||| ||| |||||
Sbjct: 93 aaatgagttatgggtt-gacccaactcattttgttaaataggttgggtct-acctataac 36
Query: 93 tcatttaat 101
|||||||||
Sbjct: 35 tcatttaat 27
>RF00768;MIR405;AC002534.1/7073-7194 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 89.7 bits (45), Expect = 8e-18
Identities = 92/105 (87%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 20 aacccatcaaatgaaatgagttatgggttagacccaactcatttaacaaaatgagttggg 79
|||||||||||| |||||||||||||||| ||||||||||||| |||| ||||||
Sbjct: 20 aacccatcaaattaaatgagttatgggtt-gacccaactcattatgttaaataggttggg 78
Query: 80 tctaacccataactcatttaattataaactcatttgattatgagt 124
|| ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 79 tc-aacccataacttatttaattctaaactcatttaattatgagt 122
Score = 75.8 bits (38), Expect = 1e-13
Identities = 64/70 (91%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
|||| ||||||||||| |||||||| |||||||| ||||||||||||| ||||||||||
Sbjct: 96 aaataagttatgggtt-gacccaacctatttaacataatgagttgggtc-aacccataac 39
Query: 93 tcatttaatt 102
||||||||||
Sbjct: 38 tcatttaatt 29
>RF00768;MIR405;AF272705.1/85454-85342 3702:Arabidopsis thaliana
(thale cress)
Length = 113
Score = 83.8 bits (42), Expect = 5e-16
Identities = 97/114 (85%), Gaps = 11/114 (9%)
Strand = Plus / Plus
Query: 11 taacaattcaacccatcaaatgaaatgagttatgggttagacccaactcatttaacaaaa 70
|||||| | ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 11 taacaacttaacccatcaaatgaaatgagttatgggtt-gacccaac---------aaaa 60
Query: 71 tgagttgggtctaacccataactcatttaattataaactcatttgattatgagt 124
|||| |||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 tgagatgggtc-aacccataactcatttaacattaaactcatttgattatgagt 113
>RF00768;MIR405;AC006951.6/55866-55745 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 79.8 bits (40), Expect = 8e-15
Identities = 105/124 (84%), Gaps = 2/124 (1%)
Strand = Plus / Plus
Query: 1 ttaacccatttaacaattcaacccatcaaatgaaatgagttatgggttagacccaactca 60
|||||||||||||||||| || ||||||||| ||||||||||||| || ||| |||| ||
Sbjct: 1 ttaacccatttaacaatttaatccatcaaattaaatgagttatggatt-gacacaaccca 59
Query: 61 tttaacaaaatgagttgggtctaacccataactcatttaattataaactcatttgattat 120
||| ||||| |||| ||| || ||||||||||||||| |||||| ||||||||||
Sbjct: 60 ttttgttaaatgggttgtgtc-aatccataactcatttaaccctaaacttatttgattat 118
Query: 121 gagt 124
||||
Sbjct: 119 gagt 122
Score = 60.0 bits (30), Expect = 7e-09
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 33 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtctaacccataac 92
||||||||||||| || ||| |||| |||||||||||||| |||| ||| || |||||||
Sbjct: 96 aaatgagttatggatt-gacacaacccatttaacaaaatgggttgtgtc-aatccataac 39
Query: 93 tcatttaatt 102
||||||||||
Sbjct: 38 tcatttaatt 29
>RF00768;MIR405;AP002059.1/10990-10861 3702:Arabidopsis thaliana
(thale cress)
Length = 130
Score = 67.9 bits (34), Expect = 3e-11
Identities = 72/82 (87%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 ttaacccatttaacaattcaacccatcaaatgaaatgagtt-atgggttagacccaactc 59
|||| |||||||||||||||||||||||||| ||||||||| ||| ||| ||||||| ||
Sbjct: 1 ttaatccatttaacaattcaacccatcaaattaaatgagttcatgagtt-gacccaattc 59
Query: 60 atttaacaaaatgagttgggtc 81
|||| | |||||| |||||||
Sbjct: 60 attttattaaatgaattgggtc 81
Score = 44.1 bits (22), Expect = 4e-04
Identities = 48/54 (88%), Gaps = 2/54 (3%)
Strand = Plus / Minus
Query: 50 gacccaactcatttaacaaaatgagttgggtctaacccat-aactcatttaatt 102
||||||| |||||||| ||||||| ||||||| ||| ||| |||||||||||||
Sbjct: 81 gacccaattcatttaataaaatgaattgggtc-aactcatgaactcatttaatt 29
