miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47028_ath-miR405d:pmrd
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 acccatcaaatgaaatgagttatgggttgacccaactcattttgttaaatgagttgggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccatcaaatgaaatgagttatgggttgacccaactcattttgttaaatgagttgggtc 60
Query: 61 taacccataactcatttaatcataaa 86
||||||||||||||||||||||||||
Sbjct: 61 taacccataactcatttaatcataaa 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 13 aaatgagttatgggtt-gacccaactcattttgttaaatgagttgggtctaacccataac 71
|||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 77 aaatgagttatgggttagacccaactcatttaacaaaatgagttgggtc-aacccataac 19
Query: 72 tcattt 77
||||||
Sbjct: 18 tcattt 13
>47026_ath-miR405a:pmrd
Length = 157
Score = 129 bits (65), Expect = 3e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 13 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 113
Query: 73 cattt 77
|||||
Sbjct: 114 cattt 118
Score = 109 bits (55), Expect = 3e-25
Identities = 81/87 (93%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 1 acccatcaaatgaaatgagttatgggtt-gacccaactcattttgttaaatgagttgggt 59
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 130 acccatcaaatgaaatgagttatgggttagacccaactcatttaacaaaatgagttgggt 71
Query: 60 ctaacccataactcatttaatcataaa 86
| |||||||||||||||||||||||||
Sbjct: 70 c-aacccataactcatttaatcataaa 45
>47027_ath-miR405b:pmrd
Length = 124
Score = 117 bits (59), Expect = 1e-27
Identities = 81/87 (93%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 acccatcaaatgaaatgagttatgggtt-gacccaactcattttgttaaatgagttgggt 59
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 21 acccatcaaatgaaatgagttatgggttagacccaactcatttaacaaaatgagttgggt 80
Query: 60 ctaacccataactcatttaatcataaa 86
||||||||||||||||||||| |||||
Sbjct: 81 ctaacccataactcatttaattataaa 107
Score = 115 bits (58), Expect = 5e-27
Identities = 65/66 (98%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 13 aaatgagttatgggtt-gacccaactcattttgttaaatgagttgggtctaacccataac 71
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 aaatgagttatgggttagacccaactcattttgttaaatgagttgggtctaacccataac 39
Query: 72 tcattt 77
||||||
Sbjct: 38 tcattt 33
>47423_ath-miRf10323-akr:pmrd
Length = 68
Score = 101 bits (51), Expect = 8e-23
Identities = 64/67 (95%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 13 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 72
|||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 66 aaatgagttatgggatgacccaactcattttgttaaatgggttgggtc-aacccataact 8
Query: 73 catttaa 79
|||||||
Sbjct: 7 catttaa 1
Score = 69.9 bits (35), Expect = 3e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 13 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 72
|||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||
Sbjct: 3 aaatgagttatgggttgacccaacccatttaacaaaatgagttgggtc-atcccataact 61
Query: 73 catttaa 79
|||||||
Sbjct: 62 catttaa 68
