miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00768;MIR405;AC022492.5/19374-19253 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 115 bits (58), Expect = 9e-26
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acccatcaaatgaaatgagttatgggttgacccaactcattttgttaaatgagttgggtc 60
||||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct: 21 acccatcaaattaaatgagttatgggttgacgcaactcattttattaaatgggttgggtc 80
Query: 61 taacccataactcatttaatcataaa 86
|||| ||||||||||||||||||||
Sbjct: 81 -aacctataactcatttaatcataaa 105
Score = 71.9 bits (36), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 13 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 72
||||||||||| |||||||||||| ||||| | |||||||||| ||| |||||||||||
Sbjct: 96 aaatgagttataggttgacccaacccatttaataaaatgagttgcgtc-aacccataact 38
Query: 73 catttaat 80
||||||||
Sbjct: 37 catttaat 30
>RF00768;MIR405;AL161581.2/10009-9888 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 111 bits (56), Expect = 1e-24
Identities = 66/68 (97%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 13 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 72
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 96 aaatgagttatgggttgacccaactcattttgttaaatgaattgggtc-aacccataact 38
Query: 73 catttaat 80
||||||||
Sbjct: 37 catttaat 30
Score = 89.7 bits (45), Expect = 5e-18
Identities = 70/77 (90%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 acccatcaaatgaaatgagttatgggttgacccaactcattttgttaaatgagttgggtc 60
||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 21 acccatcaaattaaatgagttatgggttgacccaattcatttaacaaaatgagttgggtc 80
Query: 61 taacccataactcattt 77
||||||||||||||||
Sbjct: 81 -aacccataactcattt 96
>RF00768;MIR405;AL162508.1/25569-25690 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 103 bits (52), Expect = 4e-22
Identities = 65/68 (95%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 13 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 72
||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||
Sbjct: 96 aaatgagttatgggttgacccaactcattttgttaaatgtgttgggtc-aacctataact 38
Query: 73 catttaat 80
||||||||
Sbjct: 37 catttaat 30
Score = 71.9 bits (36), Expect = 1e-12
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 3 ccatcaaatgaaatgagttatgggttgacccaactcattttgttaaatgagttgggtcta 62
|||| |||| ||||||||||| |||||||||||| ||||| |||||||||||||| |
Sbjct: 23 ccattaaattaaatgagttataggttgacccaacacatttaacaaaatgagttgggtc-a 81
Query: 63 acccataactcattta 78
||||||||||||||||
Sbjct: 82 acccataactcattta 97
>RF00768;MIR405;AC002534.1/7073-7194 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 103 bits (52), Expect = 4e-22
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 acccatcaaatgaaatgagttatgggttgacccaactcattttgttaaatgagttgggtc 60
||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 21 acccatcaaattaaatgagttatgggttgacccaactcattatgttaaataggttgggtc 80
Query: 61 taacccataactcatttaat 80
||||||||||| |||||||
Sbjct: 81 -aacccataacttatttaat 99
Score = 56.0 bits (28), Expect = 7e-08
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 13 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 72
|||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||
Sbjct: 96 aaataagttatgggttgacccaacctatttaacataatgagttgggtc-aacccataact 38
Query: 73 catttaat 80
||||||||
Sbjct: 37 catttaat 30
>RF00768;MIR405;AL161513.2/66534-66413 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 95.6 bits (48), Expect = 9e-20
Identities = 64/68 (94%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 13 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 72
||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||
Sbjct: 96 aaatgagttatgggttgacccaactcattttgttaaatgggttgggtc-aacctataact 38
Query: 73 catttaat 80
|||||||
Sbjct: 37 tatttaat 30
Score = 77.8 bits (39), Expect = 2e-14
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 acccatcaaatgaaatgagttatgggttgacccaactcattttgttaaatgagttgggtc 60
||||||||||| |||| |||||| |||||||||||| ||||| ||||||||||||||
Sbjct: 21 acccatcaaattaaataagttataggttgacccaacccatttaacaaaatgagttgggtc 80
Query: 61 taacccataactcatttaa 79
||||||||||||||||||
Sbjct: 81 -aacccataactcatttaa 98
>RF00768;MIR405;AC022522.2/78968-79086 3702:Arabidopsis thaliana
(thale cress)
Length = 119
Score = 95.6 bits (48), Expect = 9e-20
Identities = 64/68 (94%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 13 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 72
|||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||
Sbjct: 93 aaatgagttatgggttgacccaactcattttgttaaataggttgggtct-acctataact 35
Query: 73 catttaat 80
||||||||
Sbjct: 34 catttaat 27
Score = 54.0 bits (27), Expect = 3e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 13 aaatgagttatgggttgacccaactcattttgttaaatgagttgggtctaacccataact 72
||||||||||| ||| |||||||| |||| |||||||||||||| |||||||||||
Sbjct: 30 aaatgagttataggtagacccaacctatttaacaaaatgagttgggtc-aacccataact 88
Query: 73 catttaa 79
|||||||
Sbjct: 89 catttaa 95
>RF00768;MIR405;AC006951.6/55866-55745 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 81.8 bits (41), Expect = 1e-15
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 3 ccatcaaatgaaatgagttatgggttgacccaactcattttgttaaatgagttgggtcta 62
||||||||| ||||||||||||| ||||| |||| |||||||||||||| |||| ||| |
Sbjct: 23 ccatcaaattaaatgagttatggattgacacaacccattttgttaaatgggttgtgtc-a 81
Query: 63 acccataactcatttaa 79
| |||||||||||||||
Sbjct: 82 atccataactcatttaa 98
>RF00768;MIR405;AF272705.1/85454-85342 3702:Arabidopsis thaliana
(thale cress)
Length = 113
Score = 71.9 bits (36), Expect = 1e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 acccatcaaatgaaatgagttatgggttgacccaac 36
||||||||||||||||||||||||||||||||||||
Sbjct: 21 acccatcaaatgaaatgagttatgggttgacccaac 56
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 13 aaatgagttatgggttgacccaactcattttgtt 46
|||||||||||||||||||||| |||||||||||
Sbjct: 87 aaatgagttatgggttgacccatctcattttgtt 54
>RF00768;MIR405;AP002059.1/10990-10861 3702:Arabidopsis thaliana
(thale cress)
Length = 130
Score = 65.9 bits (33), Expect = 8e-11
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 acccatcaaatgaaatgagtt-atgggttgacccaactcattttgttaaatgagttgggt 59
||||||||||| ||||||||| ||| |||||||||| ||||||| |||||||| ||||||
Sbjct: 21 acccatcaaattaaatgagttcatgagttgacccaattcattttattaaatgaattgggt 80
Query: 60 c 60
|
Sbjct: 81 c 81
