miRNEST 2.0, an integrative microRNA resource :: BLAST
>47031_ath-miR408:pmrd
Length = 218
Score = 391 bits (197), Expect = e-109
Identities = 211/218 (96%)
Strand = Plus / Plus
Query: 1 aaggttagattggtattgcaatgaaagaagacaaagcggtaatgagagagagacagggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaggttagattggtattgcaatgaaagaagacaaagcggtaatgagagagagacagggaa 60
Query: 61 caagcagagcatggattgagtttactaaaacattaaacgactctgttttgtctctaccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caagcagagcatggattgagtttactaaaacattaaacgactctgttttgtctctaccca 120
Query: 121 tgcactgcctcttccctggctccctcnnnnnnnctctatatttctctctctcctttcatt 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccctctttttttctctatatttctctctctcctttcatt 180
Query: 181 tcacagctttcaatggaattttattgctactgctaacg 218
||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcacagctttcaatggaattttattgctactgctaacg 218
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 196 bits (99), Expect = 5e-51
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 47 agagagacagggaacaagcagagcatggattgagtttactaaaacattaaacgactctgt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 agagagacagggaacaagcagagcatggattgagtttactaaaacattaaacgactctgt 40
Query: 107 tttgtctctacccatgcactgcctcttccctggctccct 145
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 tttgtctctacccatgcactgcctcttccctggctccct 1
>51762_ptc-miR408:pmrd
Length = 105
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 104 tgttttgtctctacccatgcactgcctcttccctggct 141
||||||| ||||||||||||||||||||||||||||||
Sbjct: 60 tgttttggctctacccatgcactgcctcttccctggct 97
>54892_vvi-miR408:pmrd
Length = 107
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 103 ctgttttgtctctacccatgcactgcctcttccctggctc 142
||||||| |||||||||||||||||||||||||||||||
Sbjct: 60 ctgtttttgctctacccatgcactgcctcttccctggctc 99
>54389_rco-miR408:pmrd
Length = 129
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 102 tctgttttgtctctacccatgcactgcctcttccctggct 141
||||||||| |||||||| |||||||||||||||||||||
Sbjct: 72 tctgttttggctctacccctgcactgcctcttccctggct 111
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 61.9 bits (31), Expect = 2e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 104 tgttttgtctctacccatgcactgcctcttccctg 138
||||||| |||||||||||||||||||||||||||
Sbjct: 45 tgttttggctctacccatgcactgcctcttccctg 79
>48428_cpt-miR408:pmrd
Length = 100
Score = 60.0 bits (30), Expect = 7e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 101 ctctgttttgtctctacccatgcactgcctcttccctggctc 142
|||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 51 ctctgttttggctcctcccatgcactgcctcttccctggctc 92
>51347_ppe-miR408:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 5e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 103 ctgttttgtctctacccatgcactgcctcttccctggct 141
||||| || |||||| |||||||||||||||||||||||
Sbjct: 58 ctgttgtggctctactcatgcactgcctcttccctggct 96
Score = 40.1 bits (20), Expect = 7e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 51 agacagggaacaagcagagcatggattgagtt 82
|||||||||||| | ||||||||||| |||||
Sbjct: 8 agacagggaacaggtagagcatggatggagtt 39
>54649_sof-miR408d:pmrd
Length = 215
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 116 acccatgcactgcctcttccctggctccc 144
|||| ||||||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggctccc 200
>54690_tae-miR408:pmrd
Length = 187
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctccc 144
||||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctccc 160
>54648_sof-miR408c:pmrd
Length = 286
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctccc 144
||||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctccc 271
>54647_sof-miR408b:pmrd
Length = 286
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctccc 144
||||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctccc 271
>54646_sof-miR408a:pmrd
Length = 283
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctccc 144
||||||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggctccc 268
>48975_osa-miR408:pmrd
Length = 213
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctccc 144
||||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctccc 177
>46892_aqc-miR408:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 118 ccatgcactgcctcttccctggct 141
||||||||||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1
>55104_zma-miR408:pmrd
Length = 191
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctcc 143
|||||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggctcc 175
>51566_pta-miR408:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 atgcactgcctcttccctggctc 142
|||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86
>51397_ppt-miR408b:pmrd
Length = 144
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 catgcactgcctcttccctggct 141
|||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggct 114
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 atgcactgcctcttccctggct 141
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>48317_bdi-miR408:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 118 ccatgcactgcctcttccctgg 139
||||||||||||||||||||||
Sbjct: 67 ccatgcactgcctcttccctgg 88
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggct 141
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
>54650_sof-miR408e:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctccc 144
||||||| ||||||||||||||||
Sbjct: 245 tgcactgactcttccctggctccc 268
