miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 216 bits (109), Expect = 1e-55
Identities = 112/113 (99%)
Strand = Plus / Plus
Query: 34 aagcggtaatgagagagagacagggaacaagcagagcatggattgagtttactaaaacat 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagcggtaatgagagagagacagggaacaagcagagcatggattgagtttactaaaacat 60
Query: 94 taaacgactctgttttgtctctacccatgcactgcctcttccctggctccctc 146
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaacgactcttttttgtctctacccatgcactgcctcttccctggctccctc 113
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 67.9 bits (34), Expect = 6e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 104 tgttttgtctctacccatgcactgcctcttccctggct 141
||||||| ||||||||||||||||||||||||||||||
Sbjct: 64 tgttttggctctacccatgcactgcctcttccctggct 101
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 63.9 bits (32), Expect = 9e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 102 tctgttttgtctctacccatgcactgcctcttccctggct 141
||||||||| |||||||| |||||||||||||||||||||
Sbjct: 63 tctgttttggctctacccctgcactgcctcttccctggct 102
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 63.9 bits (32), Expect = 9e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 103 ctgttttgtctctacccatgcactgcctcttccctggctc 142
||||||| |||||||||||||||||||||||||||||||
Sbjct: 70 ctgtttttgctctacccatgcactgcctcttccctggctc 109
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 113 tctacccatgcactgcctcttccctggctc 142
||||||| ||||||||||||||||||||||
Sbjct: 78 tctacccctgcactgcctcttccctggctc 107
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 ctctacccatgcactgcctcttccctggc 140
|||||| ||||||||||||||||||||||
Sbjct: 90 ctctactcatgcactgcctcttccctggc 118
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 119 catgcactgcctcttccctggctc 142
||||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggctc 140
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctccc 144
||||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctccc 166
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 catgcactgcctcttccctggct 141
|||||||||||||||||||||||
Sbjct: 83 catgcactgcctcttccctggct 105
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 agacagggaacaagcagagcatggat 76
|||||||||||| |||||||||||||
Sbjct: 18 agacagggaacatgcagagcatggat 43
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctcc 143
|||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctcc 165
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctcc 143
|||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctcc 176
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctcc 143
|||||||||||||||||||||||
Sbjct: 145 tgcactgcctcttccctggctcc 167
