miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47042_ath-miR447b:pmrd
Length = 236
Score = 468 bits (236), Expect = e-133
Identities = 236/236 (100%)
Strand = Plus / Plus
Query: 1 cattcttaatatacaatactactttttcatccattaatccccttacaatgtcgagtaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cattcttaatatacaatactactttttcatccattaatccccttacaatgtcgagtaaac 60
Query: 61 gaagcatctgtcccctggtattgtcttcgagcttggtgtgtttttctagccagccccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagcatctgtcccctggtattgtcttcgagcttggtgtgtttttctagccagccccaag 120
Query: 121 ttctcgagttgatcattgtttgtattctgacacattatttggggacgagatgttttgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttctcgagttgatcattgtttgtattctgacacattatttggggacgagatgttttgttg 180
Query: 181 actcgatataagaaggggctttatggaagaaattgtagtattatatattgagaatg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actcgatataagaaggggctttatggaagaaattgtagtattatatattgagaatg 236
>47041_ath-miR447a:pmrd
Length = 237
Score = 392 bits (198), Expect = e-110
Identities = 226/234 (96%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 1 cattcttaatatacaatactactttttcatccattaatccccttacaatgtcgagtaaac 60
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 cattcttaatatataatactactttttcatccattaaaccccttacaatgtcgagtaaac 60
Query: 61 gaagcatctgtcccctggtattgtcttcgagcttggtgtgtttttctagccagccccaag 120
||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 61 gaagcatctgtcccctggtattgtcttcgagcttggtgtttttttctagccaactccaag 120
Query: 121 ttctcgagttgatcattgtttgtattc-tgacacattatttggggacgagatgttttgtt 179
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 121 ttctcgagttgatcattgtttgtattcttgagacattatttggggacgagatgttttgtt 180
Query: 180 gactcgatataagaaggggctttatggaagaaattgtagtattatatattgaga 233
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 181 gactcgatataagaaggggctttatggaagaaattgtagtattatatatcgaga 234
Score = 40.1 bits (20), Expect = 7e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 193 aaggggctttatggaagaaattgtagtattatatattgagaatg 236
|||||| || ||||| |||| ||||||||||||||| ||||||
Sbjct: 44 aaggggtttaatggatgaaaaagtagtattatatattaagaatg 1
>47043_ath-miR447c:pmrd
Length = 198
Score = 129 bits (65), Expect = 1e-30
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 1 cattcttaatatacaatactactttttcatccattaatccccttacaatgtcgagtaaac 60
|||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||
Sbjct: 1 cattcttaatatacaatacttctttttcatgcattaagccccttacaatgtcgagtaaac 60
Query: 61 gaagcatctgtcccctggtattgtcttcgagcttggt 97
|||||| ||||| || |||||||||||||||||||
Sbjct: 61 aaagcatgtgtccgctaatattgtcttcgagcttggt 97
Score = 123 bits (62), Expect = 6e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 139 tttgtattctgacacattatttggggacgagatgttttgttgactcgatataagaagggg 198
|||||||||||| || ||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 101 tttgtattctgatacggtatttggggacgacatcttttgttgactcgatataagaagggg 160
Query: 199 ctttatggaagaaattgtagtattatatat 228
||| |||||||||||||||||||||||||
Sbjct: 161 gtttgtggaagaaattgtagtattatatat 190
