miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47043_ath-miR447c:pmrd
Length = 198
Score = 392 bits (198), Expect = e-110
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 1 cattcttaatatacaatacttctttttcatgcattaagccccttacaatgtcgagtaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cattcttaatatacaatacttctttttcatgcattaagccccttacaatgtcgagtaaac 60
Query: 61 aaagcatgtgtccgctaatattgtcttcgagcttggtatttttgtattctgatacggtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagcatgtgtccgctaatattgtcttcgagcttggtatttttgtattctgatacggtat 120
Query: 121 ttggggacgacatcttttgttgactcgatataagaagggggtttgtggaagaaattgtag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttggggacgacatcttttgttgactcgatataagaagggggtttgtggaagaaattgtag 180
Query: 181 tattatatatcaagaatg 198
||||||||||||||||||
Sbjct: 181 tattatatatcaagaatg 198
>47042_ath-miR447b:pmrd
Length = 236
Score = 129 bits (65), Expect = 9e-31
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 1 cattcttaatatacaatacttctttttcatgcattaagccccttacaatgtcgagtaaac 60
|||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||
Sbjct: 1 cattcttaatatacaatactactttttcatccattaatccccttacaatgtcgagtaaac 60
Query: 61 aaagcatgtgtccgctaatattgtcttcgagcttggt 97
|||||| ||||| || |||||||||||||||||||
Sbjct: 61 gaagcatctgtcccctggtattgtcttcgagcttggt 97
Score = 123 bits (62), Expect = 5e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 101 tttgtattctgatacggtatttggggacgacatcttttgttgactcgatataagaagggg 160
|||||||||||| || ||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 139 tttgtattctgacacattatttggggacgagatgttttgttgactcgatataagaagggg 198
Query: 161 gtttgtggaagaaattgtagtattatatat 190
||| |||||||||||||||||||||||||
Sbjct: 199 ctttatggaagaaattgtagtattatatat 228
>47041_ath-miR447a:pmrd
Length = 237
Score = 125 bits (63), Expect = 1e-29
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 1 cattcttaatatacaatacttctttttcatgcattaagccccttacaatgtcgagtaaac 60
||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||
Sbjct: 1 cattcttaatatataatactactttttcatccattaaaccccttacaatgtcgagtaaac 60
Query: 61 aaagcatgtgtccgctaatattgtcttcgagcttggtattttt 103
|||||| ||||| || ||||||||||||||||||| |||||
Sbjct: 61 gaagcatctgtcccctggtattgtcttcgagcttggtgttttt 103
Score = 115 bits (58), Expect = 1e-26
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 118 tatttggggacgacatcttttgttgactcgatataagaagggggtttgtggaagaaattg 177
||||||||||||| || |||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 157 tatttggggacgagatgttttgttgactcgatataagaaggggctttatggaagaaattg 216
Query: 178 tagtattatatatc 191
||||||||||||||
Sbjct: 217 tagtattatatatc 230
