miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47066_ath-miR836:pmrd
Length = 337
Score = 668 bits (337), Expect = 0.0
Identities = 337/337 (100%)
Strand = Plus / Plus
Query: 1 gcaaagctgccattttatagtccaaaacttaaatttcgtgtttgcaagtctccacccatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaaagctgccattttatagtccaaaacttaaatttcgtgtttgcaagtctccacccatc 60
Query: 61 gaaggaaacactagaagagatataatttatttgaggggagaaatatttgacacggaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaaggaaacactagaagagatataatttatttgaggggagaaatatttgacacggaagca 120
Query: 121 tagctccatatccttcaatggaggtgtggtccttcaacaaaaatacccccctcttgaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagctccatatccttcaatggaggtgtggtccttcaacaaaaatacccccctcttgaaac 180
Query: 181 tctgtttcaccacacctccattgaaggacctgaagctatgcttccttgtcatattcctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tctgtttcaccacacctccattgaaggacctgaagctatgcttccttgtcatattcctta 240
Query: 241 ccatcaaataaatgctctgttttcctgtgtttcctttgatgcgtggagacttttaaaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccatcaaataaatgctctgttttcctgtgtttcctttgatgcgtggagacttttaaaaac 300
Query: 301 gaaatttaagtttgggctaaaataaacggcagttttg 337
|||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaatttaagtttgggctaaaataaacggcagttttg 337
Score = 63.9 bits (32), Expect = 8e-11
Identities = 105/127 (82%), Gaps = 3/127 (2%)
Strand = Plus / Minus
Query: 189 accacacctccattgaaggacctgaagctatgcttccttgtca--tattccttaccatca 246
|||||||||||||||||||| || |||||||||||| ||||| |||| || || |||
Sbjct: 150 accacacctccattgaaggatatggagctatgcttccgtgtcaaatatttctcccc-tca 92
Query: 247 aataaatgctctgttttcctgtgtttcctttgatgcgtggagacttttaaaaacgaaatt 306
||||||| | | | ||| |||||||||| |||| |||||||||| ||| ||||||||
Sbjct: 91 aataaattatatctcttctagtgtttccttcgatgggtggagacttgcaaacacgaaatt 32
Query: 307 taagttt 313
|||||||
Sbjct: 31 taagttt 25
Score = 63.9 bits (32), Expect = 8e-11
Identities = 105/127 (82%), Gaps = 3/127 (2%)
Strand = Plus / Minus
Query: 25 aaacttaaatttcgtgtttgcaagtctccacccatcgaaggaaacactagaagagatata 84
||||||||||||||| ||| |||||||||| |||| |||||||||| ||| | | |
Sbjct: 313 aaacttaaatttcgtttttaaaagtctccacgcatcaaaggaaacacaggaaaacagagc 254
Query: 85 atttatttgagggga-gaaatatttgacacggaagcatagctccatatccttcaatggag 143
|||||||||| || | | ||||| |||| |||||||||||| || |||||||||||||
Sbjct: 253 atttatttgatggtaaggaatat--gacaaggaagcatagcttcaggtccttcaatggag 196
Query: 144 gtgtggt 150
|||||||
Sbjct: 195 gtgtggt 189
>47844_ath-miRf10744-akr:pmrd
Length = 140
Score = 278 bits (140), Expect = 3e-75
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 99 agaaatatttgacacggaagcatagctccatatccttcaatggaggtgtggtccttcaac 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 agaaatatttgacacggaagcatagctccatatccttcaatggaggtgtggtccttcaac 81
Query: 159 aaaaatacccccctcttgaaactctgtttcaccacacctccattgaaggacctgaagcta 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 aaaaatacccccctcttgaaactctgtttcaccacacctccattgaaggacctgaagcta 21
Query: 219 tgcttccttgtcatattcct 238
||||||||||||||||||||
Sbjct: 20 tgcttccttgtcatattcct 1
Score = 54.0 bits (27), Expect = 7e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 108 tgacacggaagcatagctccatatccttcaatggaggtgtggt 150
||||| |||||||||||| || ||||||||||||||||||||
Sbjct: 8 tgacaaggaagcatagcttcaggtccttcaatggaggtgtggt 50
Score = 54.0 bits (27), Expect = 7e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 189 accacacctccattgaaggacctgaagctatgcttccttgtca 231
|||||||||||||||||||| || |||||||||||| |||||
Sbjct: 89 accacacctccattgaaggatatggagctatgcttccgtgtca 131
>47529_ath-miRf10429-akr:pmrd
Length = 124
Score = 246 bits (124), Expect = 9e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 108 tgacacggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacacggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacc 60
Query: 168 cccctcttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcctt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccctcttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcctt 120
Query: 228 gtca 231
||||
Sbjct: 121 gtca 124
Score = 54.0 bits (27), Expect = 7e-08
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 189 accacacctccattgaaggacctgaagctatgcttccttgtca 231
|||||||||||||||||||| || |||||||||||| |||||
Sbjct: 43 accacacctccattgaaggatatggagctatgcttccgtgtca 1
Score = 54.0 bits (27), Expect = 7e-08
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 108 tgacacggaagcatagctccatatccttcaatggaggtgtggt 150
||||| |||||||||||| || ||||||||||||||||||||
Sbjct: 124 tgacaaggaagcatagcttcaggtccttcaatggaggtgtggt 82
>48129_ath-miRf11029-akr:pmrd
Length = 112
Score = 222 bits (112), Expect = 1e-58
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 114 ggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacccccctc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacccccctc 60
Query: 174 ttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcc 112
Score = 50.1 bits (25), Expect = 1e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 189 accacacctccattgaaggacctgaagctatgcttcc 225
|||||||||||||||||||| || ||||||||||||
Sbjct: 37 accacacctccattgaaggatatggagctatgcttcc 1
Score = 50.1 bits (25), Expect = 1e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 114 ggaagcatagctccatatccttcaatggaggtgtggt 150
|||||||||||| || ||||||||||||||||||||
Sbjct: 112 ggaagcatagcttcaggtccttcaatggaggtgtggt 76
>47845_ath-miRf10745-akr:pmrd
Length = 112
Score = 222 bits (112), Expect = 1e-58
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 114 ggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacccccctc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacccccctc 53
Query: 174 ttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 ttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcc 1
Score = 50.1 bits (25), Expect = 1e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 114 ggaagcatagctccatatccttcaatggaggtgtggt 150
|||||||||||| || ||||||||||||||||||||
Sbjct: 1 ggaagcatagcttcaggtccttcaatggaggtgtggt 37
Score = 50.1 bits (25), Expect = 1e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 189 accacacctccattgaaggacctgaagctatgcttcc 225
|||||||||||||||||||| || ||||||||||||
Sbjct: 76 accacacctccattgaaggatatggagctatgcttcc 112
