miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>47068_ath-miR839:pmrd
          Length = 264

 Score =  523 bits (264), Expect = e-149
 Identities = 264/264 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcactcatgtgagcagaaagagtagcatgatattttcttcaaggtctttaccaaccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctcactcatgtgagcagaaagagtagcatgatattttcttcaaggtctttaccaaccttt 60

                                                                       
Query: 61  catcgttcccttctttgcaataacgctgttttgcaaaaccgtgatagtgctgagccgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  catcgttcccttctttgcaataacgctgttttgcaaaaccgtgatagtgctgagccgatg 120

                                                                       
Query: 121 agcctctaatgaaattatagactcatcggctcaggaccattgcggttgtgcaaaacggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcctctaatgaaattatagactcatcggctcaggaccattgcggttgtgcaaaacggtg 180

                                                                       
Query: 181 ttattgctgagaagggaacgcatgagaggttggtaaagacctcaatggaatcttatggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttattgctgagaagggaacgcatgagaggttggtaaagacctcaatggaatcttatggta 240

                                   
Query: 241 ctctttttgctcacatgagtgagt 264
           ||||||||||||||||||||||||
Sbjct: 241 ctctttttgctcacatgagtgagt 264



 Score =  121 bits (61), Expect = 3e-28
 Identities = 218/265 (82%), Gaps = 4/265 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcactcatgtgagcagaaagagtagcatgatattttcttcaaggtctttaccaaccttt 60
           |||||||||||||||| |||||||| ||| | |||   || | ||||||||||||||| |
Sbjct: 263 ctcactcatgtgagcaaaaagagtaccataagattccattga-ggtctttaccaacctct 205

                                                                       
Query: 61  cat-cgttcccttctttgcaataacgctgttttgcaaaaccgtgatagtgctgagccgat 119
           ||| |||||||||||  |||||||| | |||||||| |||||  || || ||||||||||
Sbjct: 204 catgcgttcccttctcagcaataacaccgttttgcacaaccgcaatggtcctgagccgat 145

                                                                       
Query: 120 gagcctctaatgaaattatagactcatcggctcaggaccattgcggttgtgcaaaacggt 179
           ||| || ||||   |||| || ||||||||||||| || ||  ||||| |||||||| | 
Sbjct: 144 gagtctataatttcattagaggctcatcggctcagcactatcacggttttgcaaaacagc 85

                                                                       
Query: 180 gttattgctgagaagggaacgcatgagaggttggtaaagacc-tcaatggaatcttatgg 238
           ||||||||  ||||||||||| |||| ||||||||||||||| | ||   ||| | ||| 
Sbjct: 84  gttattgcaaagaagggaacg-atgaaaggttggtaaagaccttgaagaaaatatcatgc 26

                                    
Query: 239 tactctttttgctcacatgagtgag 263
           |||||||| ||||||||||||||||
Sbjct: 25  tactctttctgctcacatgagtgag 1