miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47070_ath-miR841:pmrd
Length = 212
Score = 420 bits (212), Expect = e-118
Identities = 212/212 (100%)
Strand = Plus / Plus
Query: 1 gcaccaacactactatgtgcagaaactctgttcttaagttgcttgtgaatacgagccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaccaacactactatgtgcagaaactctgttcttaagttgcttgtgaatacgagccact 60
Query: 61 tgaaactgaaagaaacaaagaaacaatatcagtataaaattttatcaaattatactacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgaaactgaaagaaacaaagaaacaatatcagtataaaattttatcaaattatactacaa 120
Query: 121 aaaatgaaatttctttgtttatttcaatttctagtgggtcgtattcacatgcaactcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaatgaaatttctttgtttatttcaatttctagtgggtcgtattcacatgcaactcaag 180
Query: 181 actagagtatctacaacatggtcgacttggtg 212
||||||||||||||||||||||||||||||||
Sbjct: 181 actagagtatctacaacatggtcgacttggtg 212
Score = 56.0 bits (28), Expect = 1e-08
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 130 tttctttgtttatttcaatttctagtgggtcgtattcacatgcaactcaaga 181
||||||||||| ||||| |||| ||||| ||||||||||| |||||| ||||
Sbjct: 83 tttctttgtttctttcagtttcaagtggctcgtattcacaagcaacttaaga 32
Score = 56.0 bits (28), Expect = 1e-08
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 32 tcttaagttgcttgtgaatacgagccacttgaaactgaaagaaacaaagaaa 83
|||| |||||| ||||||||||| ||||| |||| ||||| |||||||||||
Sbjct: 181 tcttgagttgcatgtgaatacgacccactagaaattgaaataaacaaagaaa 130
>48203_ath-miRf11103-akr:pmrd
Length = 164
Score = 285 bits (144), Expect = 7e-78
Identities = 159/164 (96%)
Strand = Plus / Minus
Query: 25 actctgttcttaagttgcttgtgaatacgagccacttgaaactgaaagaaacaaagaaac 84
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 164 actctggtcttaagttgcttgtgaatacgagccactggaaactgaaagaaacaaagaaac 105
Query: 85 aatatcagtataaaattttatcaaattatactacaaaaaatgaaatttctttgtttattt 144
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 104 aatatcagtataaaatttcatcaaattagactacaaaaaatgaaatttctttgtttattt 45
Query: 145 caatttctagtgggtcgtattcacatgcaactcaagactagagt 188
|||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 44 caatttctagtgggtcgtattcacatacaactcaagactagagt 1
Score = 61.9 bits (31), Expect = 2e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 130 tttctttgtttatttcaatttctagtgggtcgtattcacatgcaactcaagactagagt 188
||||||||||| ||||| |||| ||||| ||||||||||| |||||| ||||| |||||
Sbjct: 106 tttctttgtttctttcagtttccagtggctcgtattcacaagcaacttaagaccagagt 164
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 44 tgtgaatacgagccacttgaaactgaaagaaacaaagaaa 83
||||||||||| ||||| |||| ||||| |||||||||||
Sbjct: 20 tgtgaatacgacccactagaaattgaaataaacaaagaaa 59
>47946_ath-miRf10846-akr:pmrd
Length = 142
Score = 281 bits (142), Expect = 1e-76
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 36 aagttgcttgtgaatacgagccacttgaaactgaaagaaacaaagaaacaatatcagtat 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aagttgcttgtgaatacgagccacttgaaactgaaagaaacaaagaaacaatatcagtat 83
Query: 96 aaaattttatcaaattatactacaaaaaatgaaatttctttgtttatttcaatttctagt 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 aaaattttatcaaattatactacaaaaaatgaaatttctttgtttatttcaatttctagt 23
Query: 156 gggtcgtattcacatgcaactc 177
||||||||||||||||||||||
Sbjct: 22 gggtcgtattcacatgcaactc 1
Score = 54.0 bits (27), Expect = 4e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 37 agttgcttgtgaatacgagccacttgaaactgaaagaaacaaagaaa 83
|||||| ||||||||||| ||||| |||| ||||| |||||||||||
Sbjct: 2 agttgcatgtgaatacgacccactagaaattgaaataaacaaagaaa 48
Score = 54.0 bits (27), Expect = 4e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 130 tttctttgtttatttcaatttctagtgggtcgtattcacatgcaact 176
||||||||||| ||||| |||| ||||| ||||||||||| ||||||
Sbjct: 95 tttctttgtttctttcagtttcaagtggctcgtattcacaagcaact 141
>48202_ath-miRf11102-akr:pmrd
Length = 142
Score = 250 bits (126), Expect = 4e-67
Identities = 138/142 (97%)
Strand = Plus / Minus
Query: 36 aagttgcttgtgaatacgagccacttgaaactgaaagaaacaaagaaacaatatcagtat 95
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 142 aagttgcttgtgaatacgagccactggaaactgaaagaaacaaagaaacaatatcagtat 83
Query: 96 aaaattttatcaaattatactacaaaaaatgaaatttctttgtttatttcaatttctagt 155
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 aaaatttcatcaaattagactacaaaaaatgaaatttctttgtttatttcaatttctagt 23
Query: 156 gggtcgtattcacatgcaactc 177
||||||||||||||| ||||||
Sbjct: 22 gggtcgtattcacatacaactc 1
Score = 54.0 bits (27), Expect = 4e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 130 tttctttgtttatttcaatttctagtgggtcgtattcacatgcaact 176
||||||||||| ||||| |||| ||||| ||||||||||| ||||||
Sbjct: 95 tttctttgtttctttcagtttccagtggctcgtattcacaagcaact 141
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 44 tgtgaatacgagccacttgaaactgaaagaaacaaagaaa 83
||||||||||| ||||| |||| ||||| |||||||||||
Sbjct: 9 tgtgaatacgacccactagaaattgaaataaacaaagaaa 48
