miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47075_ath-miR845a:pmrd
Length = 163
Score = 323 bits (163), Expect = 2e-89
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 1 agataagggattgcacgatttctcaatagttccgtcgctgcgtttccatcacgtcgattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agataagggattgcacgatttctcaatagttccgtcgctgcgtttccatcacgtcgattg 60
Query: 61 ctgtcagagccacgcctatgaagaatttgtgcggctctgataccaattgatgctatggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgtcagagccacgcctatgaagaatttgtgcggctctgataccaattgatgctatggaa 120
Query: 121 acatcgatattgcctgattccgtgtttccttttaccttgttgt 163
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acatcgatattgcctgattccgtgtttccttttaccttgttgt 163
>47076_ath-miR845b:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 94 gctctgataccaa-ttgatgctatggaaacatcgat 128
||||||||||||| ||||||| ||||||||||||||
Sbjct: 63 gctctgataccaaattgatgcaatggaaacatcgat 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 gtttccatcacgtcgattgctgtcagagccacgc 75
|||||||||||||| |||||| ||||||| ||||
Sbjct: 6 gtttccatcacgtcaattgctatcagagcaacgc 39
>54905_vvi-miR845c:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 ggctctgataccaattgatgc 113
|||||||||||||||||||||
Sbjct: 61 ggctctgataccaattgatgc 81
>54907_vvi-miR845e:pmrd
Length = 131
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 93 ggctctgataccaattgatg 112
||||||||||||||||||||
Sbjct: 102 ggctctgataccaattgatg 121
>54906_vvi-miR845d:pmrd
Length = 131
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 93 ggctctgataccaattgatg 112
||||||||||||||||||||
Sbjct: 102 ggctctgataccaattgatg 121
