miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41251_csi-MIR403:mirbase
Length = 130
Score = 258 bits (130), Expect = 1e-69
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 10 gaggcatgtttcgggtttgtgcgtgaatttaataaaataaccgcttcttttaatctcgtt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaggcatgtttcgggtttgtgcgtgaatttaataaaataaccgcttcttttaatctcgtt 60
Query: 70 cccccattttttgttagtaacaaatttttgccgtcagtgttagattcacgcacaaactcg 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccccattttttgttagtaacaaatttttgccgtcagtgttagattcacgcacaaactcg 120
Query: 130 tgatgtgtct 139
||||||||||
Sbjct: 121 tgatgtgtct 130
>41156_tcc-MIR403b:mirbase
Length = 123
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 106 gtgttagattcacgcacaaactcgtgatgtgtct 139
|||||||||||||||||||||||||||| |||||
Sbjct: 80 gtgttagattcacgcacaaactcgtgatctgtct 113
>41155_tcc-MIR403a:mirbase
Length = 126
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 107 tgttagattcacgcacaaactcgtgatgtgtcttttc 143
|||||||||||||||||||||||| || |||||||||
Sbjct: 84 tgttagattcacgcacaaactcgtaatctgtcttttc 120
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 tttcgggtttgtgcgtgaatttaataaaa 46
|||| ||||||||||||||||||||||||
Sbjct: 16 tttcaggtttgtgcgtgaatttaataaaa 44
>40390_rco-MIR403b:mirbase
Length = 98
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 106 gtgttagattcacgcacaaactcgtgat 133
||||||||||||||||||||||||||||
Sbjct: 70 gtgttagattcacgcacaaactcgtgat 97
>40389_rco-MIR403a:mirbase
Length = 95
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 106 gtgttagattcacgcacaaactcgtgat 133
||||||||||||||||||||||||||||
Sbjct: 67 gtgttagattcacgcacaaactcgtgat 94
>41679_vvi-MIR403c:mirbase
Length = 115
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 108 gttagattcacgcacaaactcgtgatgtgtc 138
|||||||||||||||||||||||||| ||||
Sbjct: 84 gttagattcacgcacaaactcgtgatctgtc 114
>39896_aly-MIR403:mirbase
Length = 125
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 109 ttagattcacgcacaaactcgtgatgtgtcttttc 143
|||||||||||||||||||||| || |||||||||
Sbjct: 91 ttagattcacgcacaaactcgtaatctgtcttttc 125
>41680_vvi-MIR403d:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 106 gtgttagattcacgcacaaactcgtgatgtgtct 139
|||||||||||||||||||||||| ||| |||||
Sbjct: 53 gtgttagattcacgcacaaactcgggatctgtct 86
>41678_vvi-MIR403b:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 106 gtgttagattcacgcacaaactcgtgatgtgtct 139
|||||||||||||||||||||||| ||| |||||
Sbjct: 53 gtgttagattcacgcacaaactcgggatctgtct 86
>41677_vvi-MIR403a:mirbase
Length = 115
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 108 gttagattcacgcacaaactcgtga 132
|||||||||||||||||||||||||
Sbjct: 84 gttagattcacgcacaaactcgtga 108
>40101_ath-MIR403:mirbase
Length = 135
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 109 ttagattcacgcacaaactcgtgatgtgtcttt 141
|||||||||||||||||||||| || |||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtcttt 135
>41682_vvi-MIR403f:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 109 ttagattcacgcacaaactcgtgatgtgtct 139
|||||||||||||||||||||| || |||||
Sbjct: 78 ttagattcacgcacaaactcgtaatctgtct 108
>41681_vvi-MIR403e:mirbase
Length = 115
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 108 gttagattcacgcacaaactcgtgatgtgtc 138
|||||||||||||||||||||| ||| ||||
Sbjct: 84 gttagattcacgcacaaactcgcgatctgtc 114
>41461_ptc-MIR403b:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 108 gttagattcacgcacaaactcgtgatgtgtc 138
|||||||||||||||||||||| ||| ||||
Sbjct: 70 gttagattcacgcacaaactcgcgatctgtc 100
>41460_ptc-MIR403a:mirbase
Length = 132
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 ttagattcacgcacaaactcgt 130
||||||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaactcgt 124
>41462_ptc-MIR403c:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 109 ttagattcacgcacaaactcg 129
|||||||||||||||||||||
Sbjct: 59 ttagattcacgcacaaactcg 79
