miRNEST 2.0, an integrative microRNA resource :: BLAST
>40322_bra-MIR171e:mirbase
Length = 119
Score = 105 bits (53), Expect = 5e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 20 cagattacacacgtactatatgcattctcttagttatctgattgagccgcgccaatatct 79
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 46 cagattacacacgtactatatacattctctcagttatctgattgagccgcgccaatatct 105
Query: 80 c 80
|
Sbjct: 106 c 106
>40290_bna-MIR171f:mirbase
Length = 119
Score = 105 bits (53), Expect = 5e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 20 cagattacacacgtactatatgcattctcttagttatctgattgagccgcgccaatatct 79
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 46 cagattacacacgtactatatacattctctcagttatctgattgagccgcgccaatatct 105
Query: 80 c 80
|
Sbjct: 106 c 106
>39849_aly-MIR171a:mirbase
Length = 198
Score = 60.0 bits (30), Expect = 2e-10
Identities = 44/46 (95%), Gaps = 2/46 (4%)
Strand = Plus / Plus
Query: 37 atatgcattctct-tag-ttatctgattgagccgcgccaatatctc 80
||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 107 atatgcattctctctagattatctgattgagccgcgccaatatctc 152
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcagat 24
||||||||||||||||||||||||
Sbjct: 57 gatattggcctggttcactcagat 80
>40060_ath-MIR171a:mirbase
Length = 123
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 ttatctgattgagccgcgccaatatctc 80
||||||||||||||||||||||||||||
Sbjct: 83 ttatctgattgagccgcgccaatatctc 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcagat 24
||||||||||||||||||||||||
Sbjct: 17 gatattggcctggttcactcagat 40
>41981_osa-MIR171a:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 tatctgattgagccgcgccaatatctc 80
|||||||||||||||||||||||||||
Sbjct: 63 tatctgattgagccgcgccaatatctc 89
>42774_zma-MIR171n:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 tatctgattgagccgcgccaatatct 79
||||||||||||||||||||||||||
Sbjct: 53 tatctgattgagccgcgccaatatct 78
>42552_sbi-MIR171g:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 tatctgattgagccgcgccaatatc 78
|||||||||||||||||||||||||
Sbjct: 53 tatctgattgagccgcgccaatatc 77
>40059_ath-MIR170:mirbase
Length = 93
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcagatt 25
|||||||||||||||||||||||||
Sbjct: 16 gatattggcctggttcactcagatt 40
>39848_aly-MIR170:mirbase
Length = 212
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcagatt 25
|||||||||||||||||||||||||
Sbjct: 75 gatattggcctggttcactcagatt 99
>41389_ptc-MIR171i:mirbase
Length = 129
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcagat 24
||||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcagat 34
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 58 tgattgagccgcgccaatatctc 80
||||||||||| |||||||||||
Sbjct: 100 tgattgagccgtgccaatatctc 122
>42761_zma-MIR171a:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatc 78
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgcgccaatatc 99
>41764_bdi-MIR171a:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgcgccaatatctc 80
|||||||||||||||||||||||
Sbjct: 50 tgattgagccgcgccaatatctc 72
>41626_vvi-MIR171e:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatc 78
|||||||||||||||||||||||
Sbjct: 68 tctgattgagccgcgccaatatc 90
>41538_sly-MIR171a:mirbase
Length = 122
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcaga 23
|||||||||||||||||||||||
Sbjct: 16 gatattggcctggttcactcaga 38
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 58 tgattgagccgcgccaatatctc 80
||||||||||| |||||||||||
Sbjct: 87 tgattgagccgtgccaatatctc 109
>41123_tcc-MIR171h:mirbase
Length = 135
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcaga 23
|||||||||||||||||||||||
Sbjct: 21 gatattggcctggttcactcaga 43
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatct 79
||||||||||||| ||||||||||
Sbjct: 93 tctgattgagccgtgccaatatct 116
>40701_mtr-MIR171g:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcaga 23
|||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcaga 28
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 58 tgattgagccgcgccaatatctc 80
||||||||||| |||||||||||
Sbjct: 80 tgattgagccgtgccaatatctc 102
>40698_mtr-MIR171d:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcaga 23
|||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcaga 28
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 58 tgattgagccgcgccaatatctc 80
||||||||||| |||||||||||
Sbjct: 80 tgattgagccgtgccaatatctc 102
>40364_rco-MIR171f:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcaga 23
|||||||||||||||||||||||
Sbjct: 4 gatattggcctggttcactcaga 26
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 58 tgattgagccgcgccaatatctc 80
||||||||||| |||||||||||
Sbjct: 86 tgattgagccgtgccaatatctc 108
>42555_sbi-MIR171j:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ctgattgagccgcgccaatatc 78
||||||||||||||||||||||
Sbjct: 82 ctgattgagccgcgccaatatc 103
>41116_tcc-MIR171a:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgcgccaatatct 79
||||||||||||||||||||||
Sbjct: 79 tgattgagccgcgccaatatct 100
>42764_zma-MIR171d:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatctc 80
||||||||||||| |||||||||||
Sbjct: 80 tctgattgagccgtgccaatatctc 104
>42640_tae-MIR171a:mirbase
Length = 130
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatctc 80
||||||||||||| |||||||||||
Sbjct: 87 tctgattgagccgtgccaatatctc 111
>42549_sbi-MIR171d:mirbase
Length = 153
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatctc 80
||||||||||||| |||||||||||
Sbjct: 112 tctgattgagccgtgccaatatctc 136
>41984_osa-MIR171d:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatctc 80
||||||||||||| |||||||||||
Sbjct: 103 tctgattgagccgtgccaatatctc 127
>41540_sly-MIR171c:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgcgccaatatc 78
|||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatc 98
>41231_csi-MIR171a:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgcgccaatatc 78
|||||||||||||||||||||
Sbjct: 67 tgattgagccgcgccaatatc 87
>41211_ccl-MIR171:mirbase
Length = 321
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgcgccaatatc 78
|||||||||||||||||||||
Sbjct: 122 tgattgagccgcgccaatatc 142
>42765_zma-MIR171e:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatct 79
||||||||||||| ||||||||||
Sbjct: 85 tctgattgagccgtgccaatatct 108
>42554_sbi-MIR171i:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatct 79
||||||||||||| ||||||||||
Sbjct: 66 tctgattgagccgtgccaatatct 89
>41985_osa-MIR171e:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatct 79
||||||||||||| ||||||||||
Sbjct: 87 tctgattgagccgtgccaatatct 110
>41890_hvu-MIR171:mirbase
Length = 173
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatct 79
||||||||||||| ||||||||||
Sbjct: 110 tctgattgagccgtgccaatatct 133
>41874_far-MIR171:mirbase
Length = 130
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 atctgattgagccgcgccaatatc 78
|||||||||||||| |||||||||
Sbjct: 87 atctgattgagccgtgccaatatc 110
>41765_bdi-MIR171b:mirbase
Length = 164
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 atctgattgagccgcgccaatatc 78
|||||||||||||| |||||||||
Sbjct: 111 atctgattgagccgtgccaatatc 134
>41630_vvi-MIR171i:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 atctgattgagccgcgccaatatc 78
|||||||||||||| |||||||||
Sbjct: 66 atctgattgagccgtgccaatatc 89
>41627_vvi-MIR171f:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 gattgagccgcgccaatatc 78
||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatc 90
>41622_vvi-MIR171a:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 atctgattgagccgcgccaatatc 78
|||||||||||||| |||||||||
Sbjct: 65 atctgattgagccgtgccaatatc 88
>41541_sly-MIR171d:mirbase
Length = 112
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 gattgagccgcgccaatatc 78
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>41391_ptc-MIR171k:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 gattgagccgcgccaatatc 78
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>41388_ptc-MIR171h:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 atctgattgagccgcgccaatatc 78
|||||||||||||| |||||||||
Sbjct: 68 atctgattgagccgtgccaatatc 91
>41387_ptc-MIR171g:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 atctgattgagccgcgccaatatc 78
|||||||||||||| |||||||||
Sbjct: 68 atctgattgagccgtgccaatatc 91
>41386_ptc-MIR171f:mirbase
Length = 130
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatct 79
||||||||||||| ||||||||||
Sbjct: 99 tctgattgagccgtgccaatatct 122
>41385_ptc-MIR171e:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 atctgattgagccgcgccaatatc 78
|||||||||||||| |||||||||
Sbjct: 62 atctgattgagccgtgccaatatc 85
>41384_ptc-MIR171d:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 gattgagccgcgccaatatc 78
||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatc 91
>41383_ptc-MIR171c:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 gattgagccgcgccaatatc 78
||||||||||||||||||||
Sbjct: 76 gattgagccgcgccaatatc 95
>41178_aqc-MIR171b:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 atctgattgagccgcgccaatatc 78
|||||||||||||| |||||||||
Sbjct: 52 atctgattgagccgtgccaatatc 75
>41118_tcc-MIR171c:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 gattgagccgcgccaatatc 78
||||||||||||||||||||
Sbjct: 84 gattgagccgcgccaatatc 103
>41117_tcc-MIR171b:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 gattgagccgcgccaatatc 78
||||||||||||||||||||
Sbjct: 81 gattgagccgcgccaatatc 100
>40699_mtr-MIR171e:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 gattgagccgcgccaatatc 78
||||||||||||||||||||
Sbjct: 69 gattgagccgcgccaatatc 88
>40365_rco-MIR171g:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 gattgagccgcgccaatatc 78
||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatc 84
>40363_rco-MIR171e:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 atctgattgagccgcgccaatatc 78
|||||||||||||| |||||||||
Sbjct: 56 atctgattgagccgtgccaatatc 79
>40361_rco-MIR171c:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 atctgattgagccgcgccaatatc 78
|||||||||||||| |||||||||
Sbjct: 59 atctgattgagccgtgccaatatc 82
>39479_ppt-MIR171b:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 gattgagccgcgccaatatc 78
||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatc 84
>39478_ppt-MIR171a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 gattgagccgcgccaatatc 78
||||||||||||||||||||
Sbjct: 64 gattgagccgcgccaatatc 83
>42770_zma-MIR171j:mirbase
Length = 129
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatc 78
||||||||||||| |||||||||
Sbjct: 88 tctgattgagccgtgccaatatc 110
>42762_zma-MIR171b:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 56 tctgattgagccgcgccaatatc 78
||||||||| |||||||||||||
Sbjct: 26 tctgattgaaccgcgccaatatc 4
>42556_sbi-MIR171k:mirbase
Length = 87
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 56 tctgattgagccgcgccaatatc 78
||||||||| |||||||||||||
Sbjct: 26 tctgattgaaccgcgccaatatc 4
>42547_sbi-MIR171b:mirbase
Length = 132
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatc 78
||||||||||||| |||||||||
Sbjct: 91 tctgattgagccgtgccaatatc 113
>41986_osa-MIR171f:mirbase
Length = 127
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatc 78
||||||||||||| |||||||||
Sbjct: 95 tctgattgagccgtgccaatatc 117
>41623_vvi-MIR171b:mirbase
Length = 99
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 58 tgattgagccgcgccaatatctc 80
||||||||||||| |||||||||
Sbjct: 69 tgattgagccgcgtcaatatctc 91
>41382_ptc-MIR171b:mirbase
Length = 103
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 tatctgattgagccgcgccaatatctc 80
||||||||||| |||| ||||||||||
Sbjct: 38 tatctgattgaaccgcaccaatatctc 12
>41122_tcc-MIR171g:mirbase
Length = 115
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatc 78
||||||||||||| |||||||||
Sbjct: 73 tctgattgagccgtgccaatatc 95
>41119_tcc-MIR171d:mirbase
Length = 117
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 52 gttatctgattgagccgcgccaatatc 78
||||| ||||||||||| |||||||||
Sbjct: 71 gttatttgattgagccgtgccaatatc 97
>40700_mtr-MIR171f:mirbase
Length = 95
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 52 gttatctgattgagccgcgccaatatc 78
||||| ||||||||||| |||||||||
Sbjct: 61 gttatttgattgagccgtgccaatatc 87
>40697_mtr-MIR171c:mirbase
Length = 105
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcaga 23
||||||||| |||||||||||||
Sbjct: 6 gatattggcttggttcactcaga 28
>40457_gma-MIR171c:mirbase
Length = 104
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 52 gttatctgattgagccgcgccaatatc 78
||||| ||||||||||| |||||||||
Sbjct: 66 gttatttgattgagccgtgccaatatc 92
>39739_smo-MIR171d:mirbase
Length = 103
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 attgagccgcgccaatatc 78
|||||||||||||||||||
Sbjct: 71 attgagccgcgccaatatc 89
