miRNEST 2.0, an integrative microRNA resource :: BLAST
>40294_bna-MIR390c:mirbase
Length = 128
Score = 111 bits (56), Expect = 1e-25
Identities = 107/124 (86%)
Strand = Plus / Plus
Query: 13 gtagttgagaagtagctgtaaagctcaggagggatagcgccatgtctcaccggtactata 72
||||| |||||||||||||||||||||||||||||||||||||| |||| | | ||
Sbjct: 3 gtagtagagaagtagctgtaaagctcaggagggatagcgccatgactcatcaccattact 62
Query: 73 aaatgtttgtatatctatattggcgctatccatcctgagttctatggcttcttcttgctt 132
| |||| | | ||| | || |||||||||||||||||||||| |||||||||||||||||
Sbjct: 63 atatgtctttgtatatgtaatggcgctatccatcctgagttccatggcttcttcttgctt 122
Query: 133 ttat 136
||||
Sbjct: 123 ttat 126
>40073_ath-MIR390b:mirbase
Length = 120
Score = 65.9 bits (33), Expect = 8e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 19 gagaagtagctgtaaagctcaggagggatagcgccatgtctcacc 63
||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1 gagaaatagctataaagctcaggagggatagcgccatggctcacc 45
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 92 ttggcgctatccatcctgagttctatggcttcttctt 128
||||||||||||||||||||||| || ||||||||||
Sbjct: 84 ttggcgctatccatcctgagttccatagcttcttctt 120
>39863_aly-MIR390b:mirbase
Length = 127
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 92 ttggcgctatccatcctgagttctatggcttcttcttgct 131
||||||||||||||||||||||| || |||||||||||||
Sbjct: 88 ttggcgctatccatcctgagttccatagcttcttcttgct 127
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 25 tagctgtaaagctcaggagggatagcgccatg 56
||||| ||||||||||||||||||||||||||
Sbjct: 11 tagctataaagctcaggagggatagcgccatg 42
>40072_ath-MIR390a:mirbase
Length = 107
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 19 gagaagtagctgtaaagctcaggagggatagcgccatg 56
|||||| | |||||||||||||||||||||||||||||
Sbjct: 4 gagaagaatctgtaaagctcaggagggatagcgccatg 41
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ttggcgctatccatcctgagtt 113
||||||||||||||||||||||
Sbjct: 66 ttggcgctatccatcctgagtt 87
>39862_aly-MIR390a:mirbase
Length = 129
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 19 gagaagtagctgtaaagctcaggagggatagcgccatg 56
|||||| | |||||||||||||||||||||||||||||
Sbjct: 15 gagaagaatctgtaaagctcaggagggatagcgccatg 52
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ttggcgctatccatcctgagtt 113
||||||||||||||||||||||
Sbjct: 77 ttggcgctatccatcctgagtt 98
>40468_gma-MIR390a:mirbase
Length = 105
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||||||||||||||||||||||||||||
Sbjct: 6 ctgtaaagctcaggagggatagcgccatg 34
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 95 gcgctatccatcctgagttctatggcttct 124
||||||||||||||||||| |||||||||
Sbjct: 67 gcgctatccatcctgagtttcatggcttct 96
>40467_gma-MIR390a:mirbase
Length = 105
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||||||||||||||||||||||||||||
Sbjct: 6 ctgtaaagctcaggagggatagcgccatg 34
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 95 gcgctatccatcctgagttctatggcttct 124
||||||||||||||||||| |||||||||
Sbjct: 67 gcgctatccatcctgagtttcatggcttct 96
>40293_bna-MIR390b:mirbase
Length = 105
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 19 gagaagtagctgtaaagctcaggagggatagcgccat 55
|||||| | ||||||||||||||||||||||||||||
Sbjct: 4 gagaagaatctgtaaagctcaggagggatagcgccat 40
>41237_csi-MIR390:mirbase
Length = 154
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 93 tggcgctatccatcctgagttctatggcttcttctt 128
||||||||||||||||||||| |||||||||||||
Sbjct: 96 tggcgctatccatcctgagtttcatggcttcttctt 131
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 16 ctgttaagctcaggagggatagcgccatg 44
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccat 55
||||||||||||||||||||||||||||
Sbjct: 16 ctgtaaagctcaggagggatagcgccat 43
>41640_vvi-MIR390:mirbase
Length = 140
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatg 34
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatg 34
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 93 tggcgctatccatcctgagttctat 117
|||||||||| ||||||||||||||
Sbjct: 94 tggcgctatctatcctgagttctat 118
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatg 34
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 tggcgctatccatcctgagttctatgg 119
|||||||||| ||||||||||||||||
Sbjct: 90 tggcgctatctatcctgagttctatgg 116
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatg 34
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 13 ctgttaagctcaggagggatagcgccatg 41
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 95 gcgctatccatcctgagttctatggcttcttcttgctt 132
||||||||||||||||||| || | ||||||||||||
Sbjct: 94 gcgctatccatcctgagtttcatcggttcttcttgctt 131
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccatg 38
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccat 55
|||| |||||||||||||||||||||||
Sbjct: 16 ctgttaagctcaggagggatagcgccat 43
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 95 gcgctatccatcctgagttctatggcttcttcttgct 131
||||||||||||||||||| || | |||||||||||
Sbjct: 88 gcgctatccatcctgagtttcatcggttcttcttgct 124
>40705_mtr-MIR390:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccat 55
|||| |||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgccat 28
>40372_rco-MIR390b:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgccatg 56
||||||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgccatg 29
>40469_gma-MIR390b:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagc 50
|||||||||||||||||||||||
Sbjct: 6 ctgtaaagctcaggagggatagc 28
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgccat 55
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgcc 53
|||| |||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tggcgctatccatcctgagtt 113
|||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagtt 97
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgcc 53
|||| |||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tggcgctatccatcctgagtt 113
|||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagtt 97
>40371_rco-MIR390a:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgcc 53
|||| |||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgcc 26
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tggcgctatccatcctgagtt 113
|||||||||||||||||||||
Sbjct: 80 tggcgctatccatcctgagtt 100
>42785_zma-MIR390b:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgcc 53
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgcc 53
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgcc 53
|||||||||||||||||||||
Sbjct: 3 aagctcaggagggatagcgcc 23
>41996_osa-MIR390:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgcc 53
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgcc 53
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgcc 53
|||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgcc 53
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agctcaggagggatagcgcc 53
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
