miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48376_bna-miR397b:pmrd
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 gaacatcattgagtgcagcgttgatgtgatttacttatctttttcattgttgaatggatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaacatcattgagtgcagcgttgatgtgatttacttatctttttcattgttgaatggatt 60
Query: 61 aaagcaatttacatcaacgttggctcaattatgttt 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagcaatttacatcaacgttggctcaattatgttt 96
>48375_bna-miR397a:pmrd
Length = 96
Score = 182 bits (92), Expect = 3e-47
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 1 gaacatcattgagtgcagcgttgatgtgatttacttatctttttcattgttgaatggatt 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 gaacatcattgagtgcagcgttgatgtgatttacttctctttttcattgttgaatggatt 60
Query: 61 aaagcaatttacatcaacgttggctcaattatgttt 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagcaatttacatcaacgttggctcaattatgttt 96
>47010_ath-miR397a:pmrd
Length = 107
Score = 97.6 bits (49), Expect = 1e-21
Identities = 86/97 (88%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 1 gaacatcattgagtgcagcgttgatgtgatttacttatctttttcattgttgaatggatt 60
||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct: 6 gaacatcattgagtgcagcgttgatgtaatttcgttttgtttttcattgttgaatggatt 65
Query: 61 aaagcaatttacatcaacgttg-gctcaattatgttt 96
||| |||||| | || ||||| ||||||||||||||
Sbjct: 66 aaaagaatttataccagcgttgcgctcaattatgttt 102
>47011_ath-miR397b:pmrd
Length = 109
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 1 gaacatcattgagtgcagcgttgatgtga-tttacttatctt-tttcattgttgaatgga 58
||||||||||||||||| ||||||||| | ||||||||| || || ||||||||||| |
Sbjct: 6 gaacatcattgagtgcatcgttgatgtaattttacttattttattccattgttgaattaa 65
Query: 59 ttaaag 64
||||||
Sbjct: 66 ttaaag 71
>54873_vvi-miR397b:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 aacatcattgagtgcagcgttgatg 26
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>54872_vvi-miR397a:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 aacatcattgagtgcagcgttgatg 26
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>51741_ptc-miR397a:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatg 26
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>48959_osa-miR397a:pmrd
Length = 114
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatg 26
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>48958_osa-miR397a:pmrd
Length = 114
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatg 26
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>48334_bdi-miR2508:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatg 26
|||||||||||||||||||||||
Sbjct: 8 catcattgagtgcagcgttgatg 30
>48315_bdi-miR397:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatg 26
|||||||||||||||||||||||
Sbjct: 16 catcattgagtgcagcgttgatg 38
>54560_sly-miR397:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 aacatcattgagtgcagcgttgatg 26
||||| |||||||||||||||||||
Sbjct: 14 aacatgattgagtgcagcgttgatg 38
>51742_ptc-miR397b:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 cattgagtgcagcgttgatg 26
||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatg 31
