miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 228 bits (115), Expect = 1e-59
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 3 ttttttgtaggcgcagcaccatcaagattcacatggaaattgaaaaatctcctaattttt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttttgtaggcgcagcaccatcaagattcacatggaaattgaaaaatctcctaattttt 60
Query: 63 aattagggttttgatatgtatatgagaatcttgatgatgctgcatcaacaaccga 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattagggttttgatatgtatatgagaatcttgatgatgctgcatcaacaaccga 115
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 137 bits (69), Expect = 4e-32
Identities = 98/108 (90%), Gaps = 6/108 (5%)
Strand = Plus / Plus
Query: 6 tttgtaggcgcagcaccatcaagattcacatggaaattgaaaaatctcctaatttttaat 65
||||||||||||||||||| |||||||||||||||||||| |||| ||||| ||
Sbjct: 4 tttgtaggcgcagcaccattaagattcacatggaaattgataaataccctaa------at 57
Query: 66 tagggttttgatatgtatatgagaatcttgatgatgctgcatcaacaa 113
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 tagggttttgatatgtatatgagaatcttgatgatgctgcatcaacaa 105
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 81 tatatgagaatcttgatgatgctgcatca 109
|||||||||||||||||||||||||||||
Sbjct: 107 tatatgagaatcttgatgatgctgcatca 135
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 84 atgagaatcttgatgatgctgcatca 109
||||||||||||||||||||||||||
Sbjct: 135 atgagaatcttgatgatgctgcatca 160
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 84 atgagaatcttgatgatgctgcatca 109
||||||||||||||||||||||||||
Sbjct: 115 atgagaatcttgatgatgctgcatca 140
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 gcagcaccatcaagattcacat 36
||||||||||||||||||||||
Sbjct: 13 gcagcaccatcaagattcacat 34
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 84 atgagaatcttgatgatgctgcatca 109
||||||||||||||||||||||||||
Sbjct: 106 atgagaatcttgatgatgctgcatca 131
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 gcagcaccatcaagattcacatgg 38
||||||||||||||||||||||||
Sbjct: 13 gcagcaccatcaagattcacatgg 36
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 84 atgagaatcttgatgatgctgcatca 109
||||||||||||||||||||||||||
Sbjct: 89 atgagaatcttgatgatgctgcatca 114
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 84 atgagaatcttgatgatgctgcatca 109
||||||||||||||||||||||||||
Sbjct: 79 atgagaatcttgatgatgctgcatca 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 gcagcaccatcaagattcacat 36
||||||||||||||||||||||
Sbjct: 13 gcagcaccatcaagattcacat 34
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgcatcaacaa 113
|||||||||||||||||||||||| ||||
Sbjct: 181 tgagaatcttgatgatgctgcatcgacaa 209
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 atgagaatcttgatgatgctgcatc 108
|||||||||||||||||||||||||
Sbjct: 140 atgagaatcttgatgatgctgcatc 164
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 atgagaatcttgatgatgctgcatc 108
|||||||||||||||||||||||||
Sbjct: 83 atgagaatcttgatgatgctgcatc 107
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgcatca 109
|||||||||||||||||||||||||
Sbjct: 98 tgagaatcttgatgatgctgcatca 122
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgcatca 109
|||||||||||||||||||||||||
Sbjct: 97 tgagaatcttgatgatgctgcatca 121
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgcatca 109
|||||||||||||||||||||||||
Sbjct: 127 tgagaatcttgatgatgctgcatca 151
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgcatca 109
|||||||||||||||||||||||||
Sbjct: 128 tgagaatcttgatgatgctgcatca 152
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgcatca 109
|||||||||||||||||||||||||
Sbjct: 58 tgagaatcttgatgatgctgcatca 82
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 atgagaatcttgatgatgctgcatc 108
|||||||||||||||||||||||||
Sbjct: 79 atgagaatcttgatgatgctgcatc 103
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 atgagaatcttgatgatgctgcatc 108
|||||||||||||||||||||||||
Sbjct: 78 atgagaatcttgatgatgctgcatc 102
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 tatgagaatcttgatgatgctgca 106
||||||||||||||||||||||||
Sbjct: 89 tatgagaatcttgatgatgctgca 112
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgcatc 108
||||||||||||||||||||||||
Sbjct: 109 tgagaatcttgatgatgctgcatc 132
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgcatc 108
||||||||||||||||||||||||
Sbjct: 130 tgagaatcttgatgatgctgcatc 153
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 82 atatgagaatcttgatgatgctgcatca 109
||||| ||||||||||||||||||||||
Sbjct: 100 atatgggaatcttgatgatgctgcatca 127
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgcatc 108
||||||||||||||||||||||||
Sbjct: 89 tgagaatcttgatgatgctgcatc 112
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgcatc 108
||||||||||||||||||||||||
Sbjct: 88 tgagaatcttgatgatgctgcatc 111
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 atgagaatcttgatgatgctgcat 107
||||||||||||||||||||||||
Sbjct: 78 atgagaatcttgatgatgctgcat 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 gaatcttgatgatgctgcatca 109
||||||||||||||||||||||
Sbjct: 30 gaatcttgatgatgctgcatca 9
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgcatc 108
||||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcatc 100
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 88 gaatcttgatgatgctgcatcaacaac 114
|||||||||||||||||||||| ||||
Sbjct: 68 gaatcttgatgatgctgcatcagcaac 94
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgcat 107
|||||||||||||||||||||||
Sbjct: 129 tgagaatcttgatgatgctgcat 151
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 agcaccatcaagattcacatggaaat 42
||||||||||||||||||||| ||||
Sbjct: 15 agcaccatcaagattcacatgcaaat 40
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 gaatcttgatgatgctgcatca 109
||||||||||||||||||||||
Sbjct: 96 gaatcttgatgatgctgcatca 117
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgca 106
||||||||||||||||||||||
Sbjct: 81 tgagaatcttgatgatgctgca 102
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 tatgagaatcttgatgatgctgcatc 108
|||| |||||||||||||||||||||
Sbjct: 149 tatgggaatcttgatgatgctgcatc 174
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 tgagaatcttgatgatgctgca 106
||||||||||||||||||||||
Sbjct: 100 tgagaatcttgatgatgctgca 121
