miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 258 bits (130), Expect = 2e-68
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 1 aaaggtgaagctgccagcatgatctagctttggttagtgagacagctgaaagaaagatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 aaaggtgaagctgccagcatgatctagctttggttagtgagacagctgaaagaaagatac 68
Query: 61 agataacacatggtatctaagcaatagtgctaaccctagctaggtcatgctctgacagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 agataacacatggtatctaagcaatagtgctaaccctagctaggtcatgctctgacagcc 128
Query: 121 tcactccttc 130
||||||||||
Sbjct: 129 tcactccttc 138
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 81.8 bits (41), Expect = 2e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 90 ctaaccctagctaggtcatgctctgacagcctcactccttc 130
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ctaaccctagctaggtcatgctctgacagcctcactccttc 107
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 aaaggtgaagctgccagcatgatctagctttggttag 37
|||||||||||||||||||||||||| ||||||||||
Sbjct: 9 aaaggtgaagctgccagcatgatctatctttggttag 45
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 75.8 bits (38), Expect = 1e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 89 gctaaccctagctaggtcatgctctgacagcctcactccttc 130
|||||||||||||||||||||| |||||||||||||||||||
Sbjct: 72 gctaaccctagctaggtcatgccctgacagcctcactccttc 113
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatctagctttgg 33
|||||||||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatctagctttgg 41
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 90 ctaaccctagctaggtcatgctctgacagcctcactccttc 130
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 58 ctaaccctagctaggtcatgctgtgacagcctcactccttc 98
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatctagctttggttag 37
|||||||||||||||||||||| ||||||||||
Sbjct: 13 gtgaagctgccagcatgatctatctttggttag 45
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 91 taaccctagctaggtcatgctctgacagcctcactccttc 130
||||||||| ||||||||||||||||||||||||||||||
Sbjct: 64 taaccctagttaggtcatgctctgacagcctcactccttc 103
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatctagct 29
|||||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 69.9 bits (35), Expect = 8e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 92 aaccctagctaggtcatgctctgacagcctcactccttc 130
||||| |||||||||||||||||||||||||||||||||
Sbjct: 73 aacccaagctaggtcatgctctgacagcctcactccttc 111
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatctagctttggtta 36
|||||||||||||||||||||| |||||||||
Sbjct: 13 gtgaagctgccagcatgatctatctttggtta 44
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatctagctttggttag 37
|||||||||||||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatctagctttggttag 45
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 88 tgctaaccctagctaggtcatgctctgacagcctcactccttc 130
|||||||||| |||||||||||| |||||||||||||||||
Sbjct: 75 tgctaaccctgactaggtcatgctgcgacagcctcactccttc 117
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatctagctttggtt 35
|||||||||||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatctagctttggtt 43
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatctagctttggtta 36
||||||||||||||||||||||| ||||||||
Sbjct: 13 gtgaagctgccagcatgatctaggtttggtta 44
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 91 taaccctagctaggtcatgctctgacagcctcactccttc 130
||||||||||||||||||||| |||||||||||| ||||
Sbjct: 95 taaccctagctaggtcatgctgcgacagcctcacttcttc 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatcta 26
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 101 taggtcatgctctgacagcctcactccttc 130
|||||||||||| |||||||||||||||||
Sbjct: 72 taggtcatgctcggacagcctcactccttc 101
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatcta 26
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatctagct 29
|||||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatctagct 29
|||||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatctagct 29
|||||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatctagct 29
|||||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 aggtgaagctgccagcatgatct 25
|||||||||||||||||||||||
Sbjct: 11 aggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgaagctgccagcatgatctag 27
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ggtgaagctgccagcatgatct 25
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ggtgaagctgccagcatgatct 25
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatcta 26
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ggtgaagctgccagcatgatct 25
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatcta 26
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
Group
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ggtgaagctgccagcatgatct 25
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
