miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AASG02000866.1/18426-18322 3988:Ricinus communis
(castor bean)
Length = 105
Score = 184 bits (93), Expect = 1e-46
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 taattcagccaaggatgacttgccggcacagcctatatatgtcttctactcacagctgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 taattcagccaaggatgacttgccggcacagcctatatatgtcttctactcacagctgct 66
Query: 61 agctaccggcaagttgttcttggctacattgta 93
|||||||||||||||||||||||||||||||||
Sbjct: 67 agctaccggcaagttgttcttggctacattgta 99
>RF00645;MIR169_2;ABIM01024501.1/586-465 3649:Carica papaya
(papaya)
Length = 122
Score = 56.0 bits (28), Expect = 8e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1 taattcagccaaggatgacttgccggcacagcctatatat 40
|||| |||||||||||||||||||||| |||| |||||||
Sbjct: 7 taatgcagccaaggatgacttgccggctcagcatatatat 46
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 ccggcaagttgttcttggctacat 89
||||||||||||||||||||||||
Sbjct: 89 ccggcaagttgttcttggctacat 112
>RF00645;MIR169_2;AARH01010231.1/110431-110554 3694:Populus
trichocarpa
Length = 124
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 taattcagccaaggatgacttgccggca 28
||||||||||||||||||||||||||||
Sbjct: 7 taattcagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AARH01011492.1/38551-38428 3694:Populus
trichocarpa
Length = 124
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 attcagccaaggatgacttgccggca 28
||||||||||||||||||||||||||
Sbjct: 9 attcagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AARH01007603.1/205939-205816 3694:Populus
trichocarpa
Length = 124
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 ccggcaagttgttcttggctacatt 90
|||||||||||||||||||||||||
Sbjct: 91 ccggcaagttgttcttggctacatt 115
>RF00645;MIR169_2;AM444055.2/7771-7675 29760:Vitis vinifera
Length = 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggcac 29
||||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggcac 35
>RF00645;MIR169_2;ABIM01004543.1/8825-9065 3649:Carica papaya
(papaya)
Length = 241
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggca 28
|||||||||||||||||||||||
Sbjct: 14 cagccaaggatgacttgccggca 36
>RF00645;MIR169_2;AB012243.1/43077-42837 3702:Arabidopsis thaliana
(thale cress)
Length = 241
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 ttcagccaaggatgacttgccgg 26
|||||||||||||||||||||||
Sbjct: 13 ttcagccaaggatgacttgccgg 35
>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
trichocarpa
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggca 28
|||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AARH01003557.1/353551-353722 3694:Populus
trichocarpa
Length = 172
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggca 28
|||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AARH01002993.1/21348-21232 3694:Populus
trichocarpa
Length = 117
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggca 28
|||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AASG02000349.1/3893-3789 3988:Ricinus communis
(castor bean)
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggca 28
|||||||||||||||||||||||
Sbjct: 13 cagccaaggatgacttgccggca 35
>RF00645;MIR169_2;BABK01005902.1/1720-1822 34305:Lotus japonicus
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggca 28
|||||||||||||||||||||||
Sbjct: 14 cagccaaggatgacttgccggca 36
>RF00645;MIR169_2;BABK01004287.1/2937-3041 34305:Lotus japonicus
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggca 28
|||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AC232769.1/98561-98655 4081:Solanum lycopersicum
Length = 95
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggca 28
|||||||||||||||||||||||
Sbjct: 15 cagccaaggatgacttgccggca 37
>RF00645;MIR169_2;AM489765.1/426-571 4102:Petunia x hybrida
Length = 146
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggca 28
|||||||||||||||||||||||
Sbjct: 15 cagccaaggatgacttgccggca 37
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 aattcagccaaggatgacttgccggca 28
|||| ||||||||||||||||||||||
Sbjct: 8 aattgagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AM488283.1/32022-31880 29760:Vitis vinifera
Length = 143
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggca 28
|||||||||||||||||||||||
Sbjct: 14 cagccaaggatgacttgccggca 36
>RF00865;MIR169_5;ABXC01001391.1/122449-122522 4558:Sorghum
bicolor (sorghum)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 agccaaggatgacttgccggca 28
||||||||||||||||||||||
Sbjct: 53 agccaaggatgacttgccggca 32
>RF00645;MIR169_2;ABIM01016748.1/13946-13822 3649:Carica papaya
(papaya)
Length = 125
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggc 27
||||||||||||||||||||||
Sbjct: 15 cagccaaggatgacttgccggc 36
>RF00645;MIR169_2;AL392145.1/61605-61729 3702:Arabidopsis thaliana
(thale cress)
Length = 125
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 taattcagccaaggatgacttgccgg 26
|||| |||||||||||||||||||||
Sbjct: 7 taatgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AASG02007020.1/8399-8148 3988:Ricinus communis
(castor bean)
Length = 252
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggc 27
||||||||||||||||||||||
Sbjct: 14 cagccaaggatgacttgccggc 35
>RF00645;MIR169_2;AC148485.10/86560-86786 3880:Medicago truncatula
(barrel medic)
Length = 227
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggc 27
||||||||||||||||||||||
Sbjct: 13 cagccaaggatgacttgccggc 34
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggca 28
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;BABK01041096.1/153-266 34305:Lotus japonicus
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggca 28
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;BABK01035994.1/667-569 34305:Lotus japonicus
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggca 28
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;FM956490.1/302-402 4151:Antirrhinum majus
(snapdragon)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggc 27
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;CAAP02000151.1/80017-79930 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 ccggcaagttgttcttggctacattg 91
|||||||||||| |||||||||||||
Sbjct: 55 ccggcaagttgtccttggctacattg 80
>RF00645;MIR169_2;CAAP02000146.1/54492-54392 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggca 28
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggca 28
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;BT060668.1/99-217 4577:Zea mays
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggc 27
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;ABXC01001391.1/122512-122383 4558:Sorghum
bicolor (sorghum)
Length = 130
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggca 28
||||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccggca 33
>RF00645;MIR169_2;ABXC01004427.1/51987-51869 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggc 27
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;ABXC01001826.1/87733-87847 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 cggcaagttgttcttggctaca 88
||||||||||||||||||||||
Sbjct: 83 cggcaagttgttcttggctaca 104
>RF00645;MIR169_2;AP008214.1/7634984-7635113 39947:Oryza sativa
Japonica Group
Length = 130
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggc 27
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AP008207.1/8728130-8728248 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ggcaagttgttcttggctacat 89
||||||||||||||||||||||
Sbjct: 88 ggcaagttgttcttggctacat 109
>RF00645;MIR169_2;AL662968.3/150189-150074 39947:Oryza sativa
Japonica Group
Length = 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 cagccaaggatgacttgccggc 27
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
