miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 71.9 bits (36), Expect = 2e-12
Identities = 85/101 (84%), Gaps = 9/101 (8%)
Strand = Plus / Plus
Query: 8 caccactacaagttgaagctgccagcatgatcttaactttccctctcctatgatttgttg 67
||||||||| ||||||||||||||||||||||||||| ||||||| || ||
Sbjct: 1 caccactaccagttgaagctgccagcatgatcttaac-ttccctc--------catggtg 51
Query: 68 gggtgagatcagatcatgtggcagtttcacctagttgttgg 108
||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 52 gggaaagatcagatcatgtggcagtttcaccttgttgttgg 92
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 8 caccactacaagttgaagctgccagcatgatcttaactttcc 49
|||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1 caccactagtagttgaagctgccagcatgatctgaactttcc 42
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 36/37 (97%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 72 gagatcagatcatgtggcagtttcacctagttgttgg 108
|||||||||||||||||||||||||||| ||||||||
Sbjct: 57 gagatcagatcatgtggcagtttcacct-gttgttgg 92
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 8 caccactacaagttgaagctgccagcatgatcttaactt 46
|||||||| ||||||||||||||||||||||| |||||
Sbjct: 1 caccactatcagttgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 18 agttgaagctgccagcatgatcttaactttcc 49
||||||||||||||||||||||| ||||||||
Sbjct: 11 agttgaagctgccagcatgatctaaactttcc 42
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 18 agttgaagctgccagcatgatcttaactttcc 49
||||||||||||||||||||||| ||||||||
Sbjct: 11 agttgaagctgccagcatgatctaaactttcc 42
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 72 gagatcagatcatgtggcagtttcacc 98
|||||||||||||||||||||||||||
Sbjct: 57 gagatcagatcatgtggcagtttcacc 83
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 8 caccactacaagttgaagctgccagcatgatct 40
|||||||| |||||||||||||||||||||||
Sbjct: 1 caccactatcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 9 accactacaagttgaagctgccagcatgatcttaacttt 47
||||||| ||||||||||||||||||||||| ||||||
Sbjct: 2 accactagcagttgaagctgccagcatgatctaaacttt 40
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 agttgaagctgccagcatgatcttaactt 46
||||||||||||||||||||||| |||||
Sbjct: 11 agttgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 8 caccactacaagttgaagctgccagcatgatct 40
|||||||| |||||||||||||||||||||||
Sbjct: 1 caccactagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 agttgaagctgccagcatgatctta 42
|||||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatctta 35
Score = 48.1 bits (24), Expect = 3e-05
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 77 cagatcatgtggcagtttcacctagttgttgg 108
||||||||||||||||||||||| ||||||||
Sbjct: 63 cagatcatgtggcagtttcacct-gttgttgg 93
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 8 caccactacaagttgaagctgccagcatgatct 40
|||||||| |||||||||||||||||||||||
Sbjct: 1 caccactagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 agttgaagctgccagcatgatcttaactt 46
||||||||||||||||||||||| |||||
Sbjct: 11 agttgaagctgccagcatgatctcaactt 39
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatcttaac 44
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatcttaac 37
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 73 agatcagatcatgtggcagtttcacc 98
|||||||||||| |||||||||||||
Sbjct: 61 agatcagatcatatggcagtttcacc 86
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 agttgaagctgccagcatgatct 40
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 agttgaagctgccagcatgatct 40
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 agatcatgtggcagtttcacct 99
||||||||||||||||||||||
Sbjct: 59 agatcatgtggcagtttcacct 80
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 agttgaagctgccagcatgatct 40
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 agatcatgtggcagtttcacct 99
||||||||||||||||||||||
Sbjct: 72 agatcatgtggcagtttcacct 93
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatcttaactt 46
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
