miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48540_gma-miR159b:pmrd
Length = 186
Score = 369 bits (186), Expect = e-103
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 1 aaacccaacttggagttccctgcactccaagtctgaaaggatatgatggtaaacctctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaacccaacttggagttccctgcactccaagtctgaaaggatatgatggtaaacctctac 60
Query: 61 tgctagttcatggatacctctgacttcttaacaacatgcgttcgaagtcaagggtttgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctagttcatggatacctctgacttcttaacaacatgcgttcgaagtcaagggtttgca 120
Query: 121 tgccctgggagatgagtttaccttgatcttttggtattggagtgaagggagctccagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgccctgggagatgagtttaccttgatcttttggtattggagtgaagggagctccagagg 180
Query: 181 gtattc 186
||||||
Sbjct: 181 gtattc 186
>48541_gma-miR159c:pmrd
Length = 185
Score = 65.9 bits (33), Expect = 1e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 139 taccttgatcttttggtattggagtgaagggagctcc 175
|||||||||||||| ||||||||||||||||||||||
Sbjct: 137 taccttgatcttttagtattggagtgaagggagctcc 173
>51607_ptc-miR159f:pmrd
Length = 201
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 148 cttttggtattggagtgaagggagctc 174
||||| |||||||||||||||||||||
Sbjct: 165 ctttttgtattggagtgaagggagctc 191
>51606_ptc-miR159e:pmrd
Length = 192
Score = 46.1 bits (23), Expect = 9e-06
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 110 aagggtttgcatgccctgggagatgagtttaccttgatctttt-ggtattggagtgaagg 168
|||||| |||||| || ||||||| | || |||||||||||| ||| |||| |||||||
Sbjct: 116 aagggtctgcatgtgctaggagatgtggttgccttgatctttttggtcttggggtgaagg 175
Query: 169 gagctcc 175
|||||||
Sbjct: 176 gagctcc 182
>54688_tae-miR319c:pmrd
Length = 253
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 156 attggagtgaagggagctcca 176
|||||||||||||||||||||
Sbjct: 1 attggagtgaagggagctcca 21
>54775_vvi-miR159a:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 6e-04
Identities = 54/64 (84%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 112 gggtttgcatgccctgggagatgagtttaccttgatcttt-tggtattggagtgaaggga 170
|||| |||||| ||| ||||| | | || ||||||||||| ||| ||||||||||||||
Sbjct: 119 gggtgtgcatgacctcggagaagtggttgccttgatctttctggccttggagtgaaggga 178
Query: 171 gctc 174
||||
Sbjct: 179 gctc 182
>54687_tae-miR319b:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 ttggagtgaagggagctcca 176
||||||||||||||||||||
Sbjct: 165 ttggagtgaagggagctcca 184
>54644_sof-miR319c:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 ttggagtgaagggagctcca 176
||||||||||||||||||||
Sbjct: 165 ttggagtgaagggagctcca 184
>48822_osa-miR159d:pmrd
Length = 189
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 gggtttgcatgccctgggagatga 135
||||||||||| ||||||||||||
Sbjct: 111 gggtttgcatgacctgggagatga 134
