miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48545_gma-miR162a:pmrd
Length = 102
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1 gtgaagtcactggatgcagcggttcatcgatctcttcctgaatcgttgtttaacatcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaagtcactggatgcagcggttcatcgatctcttcctgaatcgttgtttaacatcaga 60
Query: 61 accatgaatcgatcgataaacctctgcatccagcgctcactc 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accatgaatcgatcgataaacctctgcatccagcgctcactc 102
>48682_llu-miR162:pmrd
Length = 80
Score = 89.7 bits (45), Expect = 4e-19
Identities = 77/84 (91%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 10 ctggatgcagcggttcatcgatctcttcctgaatcgttgtttaacatcagaaccatgaat 69
||||| ||||||||| |||||||||||||||||| ||| |||||| || ||||||||||
Sbjct: 1 ctggaagcagcggtttatcgatctcttcctgaat--ttgattaaca-ca-aaccatgaat 56
Query: 70 cgatcgataaacctctgcatccag 93
||||||||||||||||||||||||
Sbjct: 57 cgatcgataaacctctgcatccag 80
>54784_vvi-miR162:pmrd
Length = 103
Score = 85.7 bits (43), Expect = 6e-18
Identities = 91/103 (88%), Gaps = 3/103 (2%)
Strand = Plus / Plus
Query: 2 tgaagtcactggatgcagcggttcatcgatctcttcctg-aatcgttgt-ttaacatcag 59
||||||||||||||||||||||||||||||||||||||| ||| ||||| || | |||
Sbjct: 1 tgaagtcactggatgcagcggttcatcgatctcttcctgaaattgttgtgaaaaaagcag 60
Query: 60 aaccatgaatcgatcgataaacctctgcatccagcgctcactc 102
| || |||||| ||||||||||||||||||||||| ||||||
Sbjct: 61 -atcaagaatcggtcgataaacctctgcatccagcgttcactc 102
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 75.8 bits (38), Expect = 5e-15
Identities = 84/99 (84%), Gaps = 4/99 (4%)
Strand = Plus / Minus
Query: 3 gaagtcactggatgcagcggttcatcgatctcttcctg----aatcgttgtttaacatca 58
|||| ||||||| ||||||||||||||||||||||||| | | ||||||| || |
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 43
Query: 59 gaaccatgaatcgatcgataaacctctgcatccagcgct 97
|| |||||| ||||||||||||||||||||||||||||
Sbjct: 42 aaaacatgaaccgatcgataaacctctgcatccagcgct 4
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 75.8 bits (38), Expect = 5e-15
Identities = 84/99 (84%), Gaps = 4/99 (4%)
Strand = Plus / Minus
Query: 3 gaagtcactggatgcagcggttcatcgatctcttcctg----aatcgttgtttaacatca 58
|||| ||||||| ||||||||||||||||||||||||| | | ||||||| || |
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 43
Query: 59 gaaccatgaatcgatcgataaacctctgcatccagcgct 97
|| |||||| ||||||||||||||||||||||||||||
Sbjct: 42 aaaacatgaaccgatcgataaacctctgcatccagcgct 4
>51616_ptc-miR162a:pmrd
Length = 107
Score = 75.8 bits (38), Expect = 5e-15
Identities = 84/99 (84%), Gaps = 4/99 (4%)
Strand = Plus / Plus
Query: 3 gaagtcactggatgcagcggttcatcgatctcttcctg----aatcgttgtttaacatca 58
|||| ||||||| ||||||||||||||||||||||||| | | ||||||| || |
Sbjct: 4 gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 63
Query: 59 gaaccatgaatcgatcgataaacctctgcatccagcgct 97
|| |||||| ||||||||||||||||||||||||||||
Sbjct: 64 aaaacatgaaccgatcgataaacctctgcatccagcgct 102
>48423_cpa-miR162a:pmrd
Length = 109
Score = 75.8 bits (38), Expect = 5e-15
Identities = 83/96 (86%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 4 aagtcactggatgcagcggttcatcgatctcttcctg---aatcgttgtttaacatcaga 60
||||||||||| ||||||||||||||||||||||||| | | | ||| || |||| |
Sbjct: 7 aagtcactggaggcagcggttcatcgatctcttcctgggaatttggtgtgaaaaatcaca 66
Query: 61 -accatgaatcgatcgataaacctctgcatccagcg 95
| |||||||||||||||||||||||||||||||||
Sbjct: 67 gaacatgaatcgatcgataaacctctgcatccagcg 102
>48493_ghr-miR162a:pmrd
Length = 148
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 63 catgaatcgatcgataaacctctgcatccagcgc 96
||||||||||||||||||||||||||||||||||
Sbjct: 84 catgaatcgatcgataaacctctgcatccagcgc 117
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 8 cactggatgcagcggttcatcgatctcttcctga 41
||||||| ||||||||||||||||||||||||||
Sbjct: 22 cactggaggcagcggttcatcgatctcttcctga 55
>54387_rco-miR162:pmrd
Length = 96
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 63 catgaatcgatcgataaacctctgcatccagc 94
||||||||||||||||||||||||||||||||
Sbjct: 65 catgaatcgatcgataaacctctgcatccagc 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 8 cactggatgcagcggttcatcgatctcttcctg 40
||||||| |||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 66 gaatcgatcgataaacctctgcatccagcgct 97
||||||||||||||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatccagcgct 11
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 gtgaagtcactggatgcagcggttcatcgatc 32
|||||||| ||||| |||||||||||||||||
Sbjct: 111 gtgaagtcgctggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccagcgct 97
||||||||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccagcgct 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gtgaagtcactggatgcagcggttcatcgatc 32
|||||||| ||||| |||||||||||||||||
Sbjct: 3 gtgaagtcgctggaggcagcggttcatcgatc 34
>48707_mtr-miR162d:pmrd
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 ctggatgcagcggttcatcgatctcttcctgaat 43
|||||||||||||||||||||||| |||||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctgaat 34
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 63 catgaatcgatcgataaacctctgcatccag 93
||||||||| |||||||||||||||||||||
Sbjct: 57 catgaatcggtcgataaacctctgcatccag 87
>48706_mtr-miR162c:pmrd
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 10 ctggatgcagcggttcatcgatctcttcctgaat 43
|||||||||||||||||||||||| |||||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctgaat 53
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 63 catgaatcgatcgataaacctctgcatcca 92
||||||||| ||||||||||||||||||||
Sbjct: 30 catgaatcggtcgataaacctctgcatcca 1
>48705_mtr-miR162b:pmrd
Length = 85
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 11 tggatgcagcggttcatcgatctcttcctgaat 43
||||||||||||||||||||||| |||||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctgaat 33
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 catgaatcgatcgataaacctctgcatcca 92
||||||||| ||||||||||||||||||||
Sbjct: 56 catgaatcggtcgataaacctctgcatcca 85
>48546_gma-miR162m:pmrd
Length = 367
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 73 tcgataaacctctgcatccagcgctcact 101
|||||||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgctcact 29
>46937_ath-miR162a:pmrd
Length = 140
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 63 catgaatcgatcgataaacctctgcatccagcg 95
||||||| |||||||||||||||||||||||||
Sbjct: 79 catgaatagatcgataaacctctgcatccagcg 111
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 5 agtcactggatgcagcggttcatcgatctcttcctg 40
|||| ||||| |||||||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 3 gaagtcactggatgcagcggttcatcgatctcttcctgaa 42
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaa 62
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 3 gaagtcactggatgcagcggttcatcgatctcttcctgaa 42
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 103 gaagacactggaggcagcggttcatcgatcttttcctgaa 64
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 3 gaagtcactggatgcagcggttcatcgatctcttcctgaa 42
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 103 gaagacactggaggcagcggttcatcgatcttttcctgaa 64
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 3 gaagtcactggatgcagcggttcatcgatctcttcctgaa 42
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaa 62
>51618_ptc-miR162c:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 3 gaagtcactggatgcagcggttcatcgatctcttcctgaa 42
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatcttttcctgaa 43
>51617_ptc-miR162b:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 3 gaagtcactggatgcagcggttcatcgatctcttcctgaa 42
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatcttttcctgaa 43
>48834_osa-miR162a:pmrd
Length = 171
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48685_lsa-miR162:pmrd
Length = 89
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 73 tcgataaacctctgcatccagcgctcac 100
||||||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgctcac 28
>54948_zma-miR162b:pmrd
Length = 130
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
|||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
|||||| |||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>48836_osa-miR162m:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
|||||||||||||| |||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
|||||||||||||| |||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccag 124
>48690_mdo-miR162:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 63 catgaatcgatcgataaacctctgcatccag 93
||||||||| ||||||||||| |||||||||
Sbjct: 58 catgaatcggtcgataaacctttgcatccag 88
