miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AC157504.2/33729-33983 3880:Medicago truncatula
(barrel medic)
Length = 255
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 aagtgggatgaagccaaggatgacttgccg 30
||||| ||||||||||||||||||||||||
Sbjct: 2 aagtgagatgaagccaaggatgacttgccg 31
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 85 ccggcaggtcatcctctggctatatttggct 115
||||||||||||||| ||||||||||||||
Sbjct: 221 ccggcaggtcatccttcggctatatttggct 251
>RF00645;MIR169_2;AC157504.2/38883-38997 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 83 tcccggcaggtcatcctctggctatatttggct 115
||||||||||||||||| ||||||||||||||
Sbjct: 79 tcccggcaggtcatccttcggctatatttggct 111
>RF00645;MIR169_2;AARH01000003.1/78094-77924 3694:Populus
trichocarpa
Length = 171
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 aagtgggatgaagccaaggatgacttgccgac 32
|||||| ||| |||||||||||||||||||||
Sbjct: 2 aagtggtatgcagccaaggatgacttgccgac 33
>RF00645;MIR169_2;BABK01035994.1/667-569 34305:Lotus japonicus
Length = 99
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 atgaagccaaggatgacttgccgacatt 35
||||||||||||||||||||||| ||||
Sbjct: 9 atgaagccaaggatgacttgccggcatt 36
>RF00645;MIR169_2;CAAP02000116.1/144670-144487 29760:Vitis
vinifera
Length = 184
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgccgacattaatttgc 42
|||||||||||||||||||| | ||||||||
Sbjct: 15 agccaaggatgacttgccgaaaataatttgc 45
>RF00645;MIR169_2;AM434841.1/8747-8930 29760:Vitis vinifera
Length = 184
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgccgacattaatttgc 42
|||||||||||||||||||| | ||||||||
Sbjct: 15 agccaaggatgacttgccgaaaataatttgc 45
>RF00645;MIR169_2;AARH01007968.1/101578-101471 3694:Populus
trichocarpa
Length = 108
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 gatgaagccaaggatgacttgccgac 32
|||| |||||||||||||||||||||
Sbjct: 8 gatgcagccaaggatgacttgccgac 33
>RF00645;MIR169_2;AARH01005671.1/55685-55803 3694:Populus
trichocarpa
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 gatgaagccaaggatgacttgccgac 32
|||| |||||||||||||||||||||
Sbjct: 8 gatgcagccaaggatgacttgccgac 33
>RF00645;MIR169_2;AASG02009044.1/9839-9706 3988:Ricinus communis
(castor bean)
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 gatgaagccaaggatgacttgccgac 32
|||| |||||||||||||||||||||
Sbjct: 8 gatgcagccaaggatgacttgccgac 33
>RF00645;MIR169_2;BABK01022237.1/713-821 34305:Lotus japonicus
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgaagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 10 tgaagccaaggatgacttgccg 31
>RF00645;MIR169_2;BT060668.1/99-217 4577:Zea mays
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 gggatgaagccaaggatgacttgccg 30
|||||| |||||||||||||||||||
Sbjct: 6 gggatgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;ABXC01004427.1/51987-51869 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 gggatgaagccaaggatgacttgccg 30
|||||| |||||||||||||||||||
Sbjct: 6 gggatgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AL662968.3/150189-150074 39947:Oryza sativa
Japonica Group
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 gggatgaagccaaggatgacttgccg 30
|||||| |||||||||||||||||||
Sbjct: 6 gggatgcagccaaggatgacttgccg 31
