miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AARH01007603.1/200394-200284 3694:Populus
trichocarpa
Length = 111
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 agtggatgtgagccaaggatgacttgccg 34
||||||| |||||||||||||||||||||
Sbjct: 3 agtggatttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;BABK01041096.1/153-266 34305:Lotus japonicus
Length = 114
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 atgtgagccaaggatgacttgccgg 35
|||||||||||||||||||||||||
Sbjct: 8 atgtgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 tgagccaaggatgacttgccggtt 37
||||||||||||||||||||||||
Sbjct: 11 tgagccaaggatgacttgccggtt 34
>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 gtggatgtgagccaaggatgacttgccg 34
|||||| |||||||||||||||||||||
Sbjct: 4 gtggatttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AL161555.2/100990-100886 3702:Arabidopsis
thaliana (thale cress)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgagccaaggatgacttgccgg 35
||||||||||||||||||||||
Sbjct: 11 tgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AC157504.2/38883-38997 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 gagccaaggatgacttgccggt 36
||||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccggt 33
>RF00645;MIR169_2;AC157504.2/27710-27818 3880:Medicago truncatula
(barrel medic)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgagccaaggatgacttgccgg 35
||||||||||||||||||||||
Sbjct: 11 tgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgagccaaggatgacttgccgg 35
||||||||||||||||||||||
Sbjct: 11 tgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgagccaaggatgacttgccgg 35
||||||||||||||||||||||
Sbjct: 11 tgagccaaggatgacttgccgg 32
