miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48574_gma-miR319c:pmrd
Length = 221
Score = 438 bits (221), Expect = e-124
Identities = 221/221 (100%)
Strand = Plus / Plus
Query: 1 ttgggagggaaagagagtgaaggagcttccctcagcccattcatggagataacgaaagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgggagggaaagagagtgaaggagcttccctcagcccattcatggagataacgaaagat 60
Query: 61 tgggttgctgaattaactgctagctcacacattcattcatacaatagtattcaattaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggttgctgaattaactgctagctcacacattcattcatacaatagtattcaattaggg 120
Query: 121 taatattgtgtgaatgaagcgggagtatatagtatctatattgcaaccctctttctctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taatattgtgtgaatgaagcgggagtatatagtatctatattgcaaccctctttctctgt 180
Query: 181 gcttggactgaaaggagctccttctttttctgctccctcca 221
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcttggactgaaaggagctccttctttttctgctccctcca 221
>54380_pvu-miR319c:pmrd
Length = 734
Score = 85.7 bits (43), Expect = 1e-17
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 1 ttgggagggaaagagagtgaaggagcttccctcagcccattcatgga 47
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ttgggaaggaaagagagtgaaggagcttccctcagcccattcatgga 271
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 166 accctctttctctgtgcttggactgaaaggagctccttcttt 207
|||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 393 accctctttctctgagcttggactgaagggagctccttcttt 434
>51712_ptc-miR319f:pmrd
Length = 202
Score = 60.0 bits (30), Expect = 8e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 167 ccctctttctctgtgcttggactgaaaggagctccttc 204
|||||||| ||||||||||||||||| |||||||||||
Sbjct: 158 ccctctttttctgtgcttggactgaagggagctccttc 195
>51351_ppl-miR319:pmrd
Length = 204
Score = 60.0 bits (30), Expect = 8e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 167 ccctctttctctgtgcttggactgaaaggagctccttc 204
|||||||| ||||||||||||||||| |||||||||||
Sbjct: 158 ccctctttttctgtgcttggactgaagggagctccttc 195
>46994_ath-miR319c:pmrd
Length = 199
Score = 60.0 bits (30), Expect = 8e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 170 tctttctctgtgcttggactgaaaggagctccttctttttct 211
||||| |||||| |||||||||| ||||||||||||||||||
Sbjct: 157 tctttatctgtgtttggactgaagggagctccttctttttct 198
>51713_ptc-miR319g:pmrd
Length = 204
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 176 tctgtgcttggactgaaaggagctccttc 204
||||||||||||||||| |||||||||||
Sbjct: 169 tctgtgcttggactgaagggagctccttc 197
>51710_ptc-miR319d:pmrd
Length = 193
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 173 ttctctgtgcttggactgaaaggagctcc 201
|||||||||||||||||||| ||||||||
Sbjct: 155 ttctctgtgcttggactgaagggagctcc 183
>51709_ptc-miR319c:pmrd
Length = 196
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 173 ttctctgtgcttggactgaaaggagctcc 201
|||||||||||||||||||| ||||||||
Sbjct: 158 ttctctgtgcttggactgaagggagctcc 186
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 173 ttctctgtgcttggactgaaaggagctc 200
|||||||||||||||||||| |||||||
Sbjct: 143 ttctctgtgcttggactgaagggagctc 170
>54846_vvi-miR319f:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 176 tctgtgcttggactgaaaggagctcc 201
||||||||||||||||| ||||||||
Sbjct: 155 tctgtgcttggactgaagggagctcc 180
>54844_vvi-miR319c:pmrd
Length = 182
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 177 ctgtgcttggactgaaaggagctcc 201
|||||||||||||||| ||||||||
Sbjct: 145 ctgtgcttggactgaagggagctcc 169
>46993_ath-miR319b:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttctctgtgcttggactgaaaggagctcc 201
|||||| ||||||||||||| ||||||||
Sbjct: 142 ttctctatgcttggactgaagggagctcc 170
