miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40509_gma-MIR1520h:mirbase
Length = 87
Score = 85.7 bits (43), Expect = 1e-17
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 78 ttgactctatggacgatgaaaatgtattgttgttgtcaacgttcaattagaacgtgacat 137
|||| ||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 25 ttgattctatagactatgaaaatgtattgttgttgtcaacgtccaatcagaacgtgacat 84
Query: 138 gtg 140
|||
Sbjct: 85 gtg 87
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 113 tcaacgttcaattagaacgtgaca 136
||||||||||||||||||||||||
Sbjct: 28 tcaacgttcaattagaacgtgaca 5
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 142 ttgtcatcgtccaatcagaatgtgacatgtg 172
|||||| ||||||||||||| ||||||||||
Sbjct: 57 ttgtcaacgtccaatcagaacgtgacatgtg 87
>40511_gma-MIR1520j:mirbase
Length = 176
Score = 56.0 bits (28), Expect = 1e-08
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 9 gaatattgattgtcatgtgtcacattctgattggatgataactgtcatgtgttaggtttt 68
|||| |||||||||||||||||| |||| |||||||||| || ||| |||||| ||| |
Sbjct: 176 gaatgttgattgtcatgtgtcacgttcttattggatgatgacgatcacgtgttatgttat 117
Query: 69 gatt 72
||||
Sbjct: 116 gatt 113
Score = 50.1 bits (25), Expect = 6e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 153 caatcagaatgtgacatgtgacagtcaacattc 185
|||| |||| |||||||||||||||||||||||
Sbjct: 33 caataagaacgtgacatgtgacagtcaacattc 1
>40506_gma-MIR1520e:mirbase
Length = 164
Score = 50.1 bits (25), Expect = 6e-07
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 121 caattagaacgtgacatgtgattgtcatcgtccaatcagaatgtgacatgtgacagt 177
||||||||| |||||||||| |||||| ||||||||||| |||| | ||||||||
Sbjct: 59 caattagaatatgacatgtgacagtcatcatccaatcagaacgtgatacgtgacagt 3
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 19 tgtcatgtgtcacattctgattggatgataactgtca 55
||||| || |||| ||||||||||||||| |||||||
Sbjct: 5 tgtcacgtatcacgttctgattggatgatgactgtca 41
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 152 ccaatcagaatgtgacatgtgacagtca 179
||||| ||||| ||||||||||||||||
Sbjct: 60 ccaattagaatatgacatgtgacagtca 33
>40513_gma-MIR1520l:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 15 tgattgtcatgtgtcacattctgattgg 42
||||||||| |||||| |||||||||||
Sbjct: 6 tgattgtcacgtgtcatattctgattgg 33
>40510_gma-MIR1520i:mirbase
Length = 144
Score = 40.1 bits (20), Expect = 6e-04
Identities = 71/88 (80%)
Strand = Plus / Minus
Query: 97 aaatgtattgttgttgtcaacgttcaattagaacgtgacatgtgattgtcatcgtccaat 156
|||||||||||| || ||| | |||| ||||| ||||| |||| ||||| ||||||
Sbjct: 89 aaatgtattgttattttcattgaccaatcagaacatgacacgtgacagtcataatccaat 30
Query: 157 cagaatgtgacatgtgacagtcaacatt 184
|||| |||||| |||| ||||||||||
Sbjct: 29 aagaacgtgacacgtgatagtcaacatt 2
>40507_gma-MIR1520f:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 15 tgattgtcatgtgtcacattctgattgg 42
|||||||||||||||| ||||||||||
Sbjct: 103 tgattgtcatgtgtcatgttctgattgg 76
>40504_gma-MIR1520c:mirbase
Length = 140
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 18 ttgtcatgtgtcacattctgattggatg 45
||||||||||||| |||||||||||||
Sbjct: 101 ttgtcatgtgtcatgttctgattggatg 74
