miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40510_gma-MIR1520i:mirbase
Length = 144
Score = 69.9 bits (35), Expect = 5e-13
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 82 cattgaccaatcaaaacataacatgtgacagtcatcatccaataacaacgtgaca 136
||||||||||||| ||||| ||| ||||||||||| ||||||||| |||||||||
Sbjct: 72 cattgaccaatcagaacatgacacgtgacagtcataatccaataagaacgtgaca 18
>40511_gma-MIR1520j:mirbase
Length = 176
Score = 60.0 bits (30), Expect = 5e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 87 accaatcaaaacataacatgtgacagtcatcatccaataacaacgtgaca 136
|||||||| ||||||||| |||| ||||||||||||||| |||||||||
Sbjct: 110 accaatcataacataacacgtgatcgtcatcatccaataagaacgtgaca 159
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 106 gtgacagtcatcatccaataacaacgtgacatgt 139
|||||| ||||||| |||||| ||||||||||||
Sbjct: 48 gtgacaatcatcattcaataagaacgtgacatgt 15
>40506_gma-MIR1520e:mirbase
Length = 164
Score = 60.0 bits (30), Expect = 5e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 88 ccaatcaaaacataacatgtgacagtcatcatccaataacaacgtgacat 137
||||||| ||||| ||| ||||||||| ||||||||||| ||||||||||
Sbjct: 105 ccaatcagaacatgacacgtgacagtcgtcatccaataagaacgtgacat 154
Score = 58.0 bits (29), Expect = 2e-09
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 82 cattgaccaatcaaaacataacatgtgacagtcatcatccaataacaacgtga 134
||||||||||| | || || ||||||||||||||||||||||| | |||||||
Sbjct: 66 cattgaccaattagaatatgacatgtgacagtcatcatccaatcagaacgtga 14
>40503_gma-MIR1520b:mirbase
Length = 129
Score = 52.0 bits (26), Expect = 1e-07
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 88 ccaatcaaaacataacatgtgacagtcatcatccaataacaacgtgacat 137
||||||| ||||| ||| |||||||||||||| ||||| ||||||||||
Sbjct: 79 ccaatcagaacatgacacgtgacagtcatcatttaataagaacgtgacat 128
>40512_gma-MIR1520k:mirbase
Length = 128
Score = 50.1 bits (25), Expect = 4e-07
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 82 cattgaccaatcaaaacataacatgtgacagtcatcatccaataa 126
||||||| ||||| ||||| ||| |||||| ||||||||||||||
Sbjct: 48 cattgactaatcagaacatgacacgtgacaatcatcatccaataa 4
>40502_gma-MIR1520a:mirbase
Length = 150
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 4 tgtcatgttgttattggatgatgac 28
||||||||| |||||||||||||||
Sbjct: 22 tgtcatgttcttattggatgatgac 46
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 109 acagtcatcatccaataacaacgtgaca 136
|||||||||||||||||| ||| |||||
Sbjct: 49 acagtcatcatccaataagaacatgaca 22
