miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40510_gma-MIR1520i:mirbase
Length = 144
Score = 103 bits (52), Expect = 3e-23
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 47 atgtcaactccataaaagatgaaatgtattgttgtttttattgaccaatcagaacatgac 106
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct: 110 atgtcaactccataaaagattaaatgtattgttattttcattgaccaatcagaacatgac 51
Query: 107 acatgaca 114
|| |||||
Sbjct: 50 acgtgaca 43
>40502_gma-MIR1520a:mirbase
Length = 150
Score = 101 bits (51), Expect = 1e-22
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 47 atgtcaactccataaaagatgaaatgtattgttgtttttattgaccaatcagaacatgac 106
|||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct: 112 atgtcaactccataaaagatgaaatgcattgttattttcattgaccaatcagaacatgac 53
Query: 107 aca 109
|||
Sbjct: 52 aca 50
>40513_gma-MIR1520l:mirbase
Length = 110
Score = 99.6 bits (50), Expect = 4e-22
Identities = 65/70 (92%)
Strand = Plus / Minus
Query: 47 atgtcaactccataaaagatgaaatgtattgttgtttttattgaccaatcagaacatgac 106
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct: 77 atgtcaactccatataagatgaaatgcattgttgttttcattgaccaatcagaatatgac 18
Query: 107 acatgacaat 116
|| |||||||
Sbjct: 17 acgtgacaat 8
>40514_gma-MIR1520m:mirbase
Length = 128
Score = 91.7 bits (46), Expect = 1e-19
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 47 atgtcaactccataaaagatgaaatgtattgttgtttttattgaccaatcagaacatgac 106
|||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||
Sbjct: 43 atgtcaactccataaaagatgaaatgaattgttgttttcatttatcaatcagaacatgac 102
Query: 107 acatgacaat 116
| |||||||
Sbjct: 103 atgtgacaat 112
>40507_gma-MIR1520f:mirbase
Length = 103
Score = 87.7 bits (44), Expect = 2e-18
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 61 aaagatgaaatgtattgttgtttttattgaccaatcagaacatgacacatgacaat 116
|||||||||||| |||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 46 aaagatgaaatgcattgttattttcattgaccaatcagaacatgacacatgacaat 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 93 aatcagaacatgacacatgacaat 116
|||||||||||||||| |||||||
Sbjct: 40 aatcagaacatgacacgtgacaat 17
>40504_gma-MIR1520c:mirbase
Length = 140
Score = 79.8 bits (40), Expect = 4e-16
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 47 atgtcaactccataaaagatgaaatgtattgttgtttttattgaccaatcagaacatgac 106
||||||||||||||||| || ||||||||| || |||||||||| ||||||||| |||||
Sbjct: 76 atgtcaactccataaaaaataaaatgtattattatttttattgatcaatcagaatatgac 17
Query: 107 acatgaca 114
|| |||||
Sbjct: 16 acgtgaca 9
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 91 ccaatcagaacatgacacatgacaa 115
|||||||||||||||||||||||||
Sbjct: 77 ccaatcagaacatgacacatgacaa 101
Score = 42.1 bits (21), Expect = 9e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 4 tgtcacgtgtcatgatctgattaattaataaaaataa 40
||||||||||||| ||||||| || |||||||||||
Sbjct: 9 tgtcacgtgtcatattctgattgatcaataaaaataa 45
>40512_gma-MIR1520k:mirbase
Length = 128
Score = 75.8 bits (38), Expect = 6e-15
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 47 atgtcaactccataaaagatgaaatgtattgttgtttttattgaccaatcagaacatgac 106
|||||||| |||| ||||||||||| |||| |||||| |||||| ||||||||||||||
Sbjct: 86 atgtcaacaccatgaaagatgaaatacattgctgttttcattgactaatcagaacatgac 27
Query: 107 acatgacaat 116
|| |||||||
Sbjct: 26 acgtgacaat 17
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 91 ccaatcagaacatgacacatgaca 114
||||||||||||||||||||||||
Sbjct: 87 ccaatcagaacatgacacatgaca 110
>40506_gma-MIR1520e:mirbase
Length = 164
Score = 73.8 bits (37), Expect = 3e-14
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 47 atgtcaactccataaaagatgaaatgtattgttgtttttattgaccaatcagaacatgac 106
||||||||||||| |||||||||||| |||| |||||| |||||||||| |||| |||||
Sbjct: 104 atgtcaactccatgaaagatgaaatgcattgctgttttcattgaccaattagaatatgac 45
Query: 107 a 107
|
Sbjct: 44 a 44
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 ccaatcagaacatgacacatgaca 114
|||||||||||||||||| |||||
Sbjct: 105 ccaatcagaacatgacacgtgaca 128
>40515_gma-MIR1520n:mirbase
Length = 96
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 47 atgtcaactccataaaagatgaaatgtattgttgtttttattgaccaatcagaacatgac 106
||||||| ||||| ||| || |||||||||||| |||| ||| | |||||||||||||||
Sbjct: 27 atgtcaattccattaaaaataaaatgtattgttattttcattaatcaatcagaacatgac 86
Query: 107 acatgaca 114
|| |||||
Sbjct: 87 acgtgaca 94
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 4 tgtcacgtgtcatgatctgattaattaataaaaataaca 42
|||||||||||||| ||||||| |||||| |||||||||
Sbjct: 94 tgtcacgtgtcatgttctgattgattaatgaaaataaca 56
>40505_gma-MIR1520d:mirbase
Length = 111
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 74 attgttgtttttattgaccaatcagaacatgacacatgacaat 116
||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 60 attgttgttttcattgatcaatcagaacatgacacgtgacaat 102
>40511_gma-MIR1520j:mirbase
Length = 176
Score = 46.1 bits (23), Expect = 6e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 50 tcaactccataaaagatgaaatgtattgttgtttttattgaccaatcagaacatgacac 108
|||||||||| |||||||||||| ||| || |||| | | |||||||| ||||| ||||
Sbjct: 70 tcaactccatgaaagatgaaatgcattattattttcactaaccaatcataacataacac 128
>40508_gma-MIR1520g:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 86 attgaccaatcagaacatgacacatgacaat 116
||||| ||||||||||||||||| |||||||
Sbjct: 72 attgatcaatcagaacatgacacgtgacaat 102
>40503_gma-MIR1520b:mirbase
Length = 129
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 ccaatcagaacatgacacatgaca 114
|||||||||||||||||| |||||
Sbjct: 79 ccaatcagaacatgacacgtgaca 102
