miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 230 bits (116), Expect = 4e-60
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 11 ttgtttcttagagttcctttgaacgcttcatgcatgagaatatgtatttggtctaatatc 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtttcttagagttcctttgaacgcttcatgcatgagaatatgtatttggtctaatatc 60
Query: 71 cattagaaaagatagttcttcatcaatgaagtgtttgggggaactcttgggttcaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattagaaaagatagttcttcatcaatgaagtgtttgggggaactcttgggttcaa 116
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 174 bits (88), Expect = 2e-43
Identities = 110/116 (94%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 11 ttgtttcttagagttcctttgaacgcttcatgcatgagaatatgtatttggtctaatatc 70
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 1 ttgtctcttagagttcctttgaacgcttcatgcatgagaatatctatttggtctaaaatc 60
Query: 71 cattagaaaagatagttcttcatcaatgaagtgtttgggggaactcttgggttcaa 126
|||||||||| |||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 61 cattagaaaa-atagttcttcttaaatgaagtgtttgggggaactcttgggttcaa 115
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 141 bits (71), Expect = 3e-33
Identities = 108/120 (90%), Gaps = 4/120 (3%)
Strand = Plus / Plus
Query: 11 ttgtttcttagagttcctttgaacgcttcatgcatgagaatatgtat----ttggtctaa 66
|||| |||||||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct: 1 ttgtctcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaa 60
Query: 67 tatccattagaaaagatagttcttcatcaatgaagtgtttgggggaactcttgggttcaa 126
||||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 61 aatccattaggatagatagttcttcttaaatgaagtgtttgggggaactcttgggttcaa 120
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 109 bits (55), Expect = 1e-23
Identities = 103/117 (88%), Gaps = 9/117 (7%)
Strand = Plus / Plus
Query: 11 ttgtttcttagagttcctttgaacgcttcatgcatgagaa----tatgtatttggtctaa 66
|||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 1 ttgtctcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaa 60
Query: 67 tatccattagaaaagatag---ttcttcatcaatgaagtgtttgggggaactcttgg 120
||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 61 agtccattagaaaagatagccattttt--tcaatgaagtgtttgggggaactcttgg 115
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 63.9 bits (32), Expect = 5e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 81 gatagttcttcatcaatgaagtgtttgggggaactcttgg 120
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 51 gatagttcttgttcaatgaagtgtttgggggaactcttgg 90
>RF00451;mir-395;AC146854.19/48268-48370 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 96 atgaagtgtttgggggaactcttgggttcaa 126
|||||||||||||||||||||||||||||||
Sbjct: 73 atgaagtgtttgggggaactcttgggttcaa 103
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 93 tcaatgaagtgtttgggggaactcttgggttcaa 126
|||||||||||||||||||||||| |||||||||
Sbjct: 81 tcaatgaagtgtttgggggaactcctgggttcaa 114
>RF00451;mir-395;AC149601.3/55942-55838 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 81 gatagttcttcatcaatgaagtgtttgggggaactcttgg 120
|||||||||| |||||||||| |||||||||||||||||
Sbjct: 60 gatagttcttgttcaatgaagtatttgggggaactcttgg 99
>RF00451;mir-395;AC194694.1/82977-83070 4081:Solanum lycopersicum
Length = 94
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 99 aagtgtttgggggaactcttgggttca 125
|||||||||||||||||||||||||||
Sbjct: 67 aagtgtttgggggaactcttgggttca 93
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 atgaagtgtttgggggaactcttgg 120
|||||||||||||||||||||||||
Sbjct: 73 atgaagtgtttgggggaactcttgg 97
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactcttgg 120
||||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactcttgg 73
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactcttgg 120
||||||||||||||||||||||||
Sbjct: 57 tgaagtgtttgggggaactcttgg 80
>RF00451;mir-395;AC149601.3/39285-39203 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactcttgg 120
||||||||||||||||||||||||
Sbjct: 54 tgaagtgtttgggggaactcttgg 77
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 ttgtttcttagagttcctttgaacgcttcat 41
||||||||| |||||||| ||||||||||||
Sbjct: 1 ttgtttcttggagttcctctgaacgcttcat 31
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactcttgg 120
||||||||||||||||||||||||
Sbjct: 62 tgaagtgtttgggggaactcttgg 85
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactcttgg 120
||||||||||||||||||||||||
Sbjct: 62 tgaagtgtttgggggaactcttgg 85
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactcttgg 120
||||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactcttgg 97
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactcttgg 120
||||||||||||||||||||||||
Sbjct: 56 tgaagtgtttgggggaactcttgg 79
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactcttgg 120
||||||||||||||||||||||||
Sbjct: 70 tgaagtgtttgggggaactcttgg 93
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactcttgg 120
||||||||||||||||||||||||
Sbjct: 85 tgaagtgtttgggggaactcttgg 108
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactcttg 119
|||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactcttg 72
>RF00451;mir-395;AC194694.1/91207-91297 4081:Solanum lycopersicum
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactcttgggtt 123
|||||||||||||||||||| ||||||
Sbjct: 62 tgaagtgtttgggggaactcctgggtt 88
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactcttg 119
|||||||||||||||||||||||
Sbjct: 58 tgaagtgtttgggggaactcttg 80
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 cttcatcaatgaagtgtttgggggaactct 117
|||| ||| |||||||||||||||||||||
Sbjct: 76 cttcctcactgaagtgtttgggggaactct 105
>RF00451;mir-395;AC145120.1/105818-105725 50514:Solanum demissum
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 96 atgaagtgtttgggggaactcttgggttca 125
||||||||||||||||||||| |||||||
Sbjct: 64 atgaagtgtttgggggaactcgcgggttca 93
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactctt 118
||||||||||||||||||||||
Sbjct: 57 tgaagtgtttgggggaactctt 78
>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
Indica Group
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 97 tgaagtgtttgggggaactctt 118
||||||||||||||||||||||
Sbjct: 57 tgaagtgtttgggggaactctt 78
