miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 220 bits (111), Expect = 3e-57
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1 tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtcc 65
Query: 61 attagaaaagatagccattttttcaatgaagtgtttgggggaactcttgga 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 attagaaaagatagccattttttcaatgaagtgtttgggggaactcttgga 116
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 131 bits (66), Expect = 2e-30
Identities = 100/110 (90%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 1 tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 6 tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatcc 65
Query: 61 attagaaaagatagccattttttcaatgaagtgtttgggggaactcttgg 110
||||| | |||||| || || ||||||||||||||||||||||||||
Sbjct: 66 attaggatagatag-ttcttcttaaatgaagtgtttgggggaactcttgg 114
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 107 bits (54), Expect = 3e-23
Identities = 99/112 (88%), Gaps = 9/112 (8%)
Strand = Plus / Plus
Query: 1 tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtcc 60
||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct: 6 tcttagagttcctttgaacgcttcatgcatgagaa----tatgtatttggtctaatatcc 61
Query: 61 attagaaaagatagccattttt--tcaatgaagtgtttgggggaactcttgg 110
|||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 62 attagaaaagatag---ttcttcatcaatgaagtgtttgggggaactcttgg 110
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 105 bits (53), Expect = 1e-22
Identities = 98/110 (89%), Gaps = 6/110 (5%)
Strand = Plus / Plus
Query: 1 tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtcc 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 6 tcttagagttcctttgaacgcttcatgcatgagaa----tatctatttggtctaaaatcc 61
Query: 61 attagaaaagatagccattttttcaatgaagtgtttgggggaactcttgg 110
||||||||| |||| || || ||||||||||||||||||||||||||
Sbjct: 62 attagaaaa-atag-ttcttcttaaatgaagtgtttgggggaactcttgg 109
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 79.8 bits (40), Expect = 7e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 51 tctaaagtccattagaaaagatagccattttttcaatgaagtgtttgggggaactc 106
|||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct: 49 tctaaactccattagaaatgatagccatgtcttcaatgaagtgtttgggggaactc 104
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 82 ttcaatgaagtgtttgggggaactcttgga 111
||||||||||||||||||||||||||||||
Sbjct: 62 ttcaatgaagtgtttgggggaactcttgga 91
>RF00451;mir-395;AC149601.3/55942-55838 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 82 ttcaatgaagtgtttgggggaactcttgga 111
||||||||||| ||||||||||||||||||
Sbjct: 71 ttcaatgaagtatttgggggaactcttgga 100
>RF00451;mir-395;AC149601.3/39285-39203 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 82 ttcaatgaagtgtttgggggaactcttgga 111
|||| |||||||||||||||||||||||||
Sbjct: 49 ttcattgaagtgtttgggggaactcttgga 78
>RF00451;mir-395;AC146854.19/48268-48370 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 86 atgaagtgtttgggggaactcttgg 110
|||||||||||||||||||||||||
Sbjct: 73 atgaagtgtttgggggaactcttgg 97
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 tgaagtgtttgggggaactcttgga 111
|||||||||||||||||||||||||
Sbjct: 62 tgaagtgtttgggggaactcttgga 86
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 86 atgaagtgtttgggggaactcttgg 110
|||||||||||||||||||||||||
Sbjct: 73 atgaagtgtttgggggaactcttgg 97
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 tgaagtgtttgggggaactcttgg 110
||||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactcttgg 73
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 tgaagtgtttgggggaactcttgg 110
||||||||||||||||||||||||
Sbjct: 57 tgaagtgtttgggggaactcttgg 80
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 tgaagtgtttgggggaactcttgg 110
||||||||||||||||||||||||
Sbjct: 62 tgaagtgtttgggggaactcttgg 85
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 tgaagtgtttgggggaactcttgg 110
||||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactcttgg 97
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 tgaagtgtttgggggaactcttgg 110
||||||||||||||||||||||||
Sbjct: 56 tgaagtgtttgggggaactcttgg 79
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 tgaagtgtttgggggaactcttgg 110
||||||||||||||||||||||||
Sbjct: 70 tgaagtgtttgggggaactcttgg 93
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 tgaagtgtttgggggaactcttgg 110
||||||||||||||||||||||||
Sbjct: 85 tgaagtgtttgggggaactcttgg 108
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 87 tgaagtgtttgggggaactcttg 109
|||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactcttg 72
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 87 tgaagtgtttgggggaactcttg 109
|||||||||||||||||||||||
Sbjct: 58 tgaagtgtttgggggaactcttg 80
>RF00451;mir-395;AC194694.1/82977-83070 4081:Solanum lycopersicum
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 aagtgtttgggggaactcttgg 110
||||||||||||||||||||||
Sbjct: 67 aagtgtttgggggaactcttgg 88
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgaagtgtttgggggaactctt 108
||||||||||||||||||||||
Sbjct: 57 tgaagtgtttgggggaactctt 78
>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
Indica Group
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgaagtgtttgggggaactctt 108
||||||||||||||||||||||
Sbjct: 57 tgaagtgtttgggggaactctt 78
