miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AC174352.7/5727-5571 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 87.7 bits (44), Expect = 3e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 14 tttacattttagattcattcatttaatgatgcacatggtctttattgtagaccacataca 73
||||| |||||| |||||||| ||||||||| | |||||| |||| |||||||||||||
Sbjct: 35 tttactttttaggttcattcaattaatgatgtatgtggtctatattatagaccacataca 94
Query: 74 tcattaaatgaatgaaccta 93
||||||| ||||||||||||
Sbjct: 95 tcattaattgaatgaaccta 114
Score = 79.8 bits (40), Expect = 7e-15
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 14 tttacattttagattcattcatttaatgatgcacatggtctttattgtagaccacataca 73
||||| |||||| |||||||| ||||||||| | |||||| || | |||||||||||||
Sbjct: 123 tttactttttaggttcattcaattaatgatgtatgtggtctataatatagaccacataca 64
Query: 74 tcattaaatgaatgaaccta 93
||||||| ||||||||||||
Sbjct: 63 tcattaattgaatgaaccta 44
>RF00906;MIR1122;AC147201.19/81694-81794 3880:Medicago truncatula
(barrel medic)
Length = 101
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 11 aaatttacattttagattcattcatttaatgatgcacatggtctttattgtagaccacat 70
||||| || |||||| |||||||||||||||||| | |||||| |||| | |||||||
Sbjct: 98 aaattcactttttaggttcattcatttaatgatgtatgtggtctatattatgaaccacat 39
Query: 71 acatcattaaatgaatgaaccta 93
|||||||||||||||||||||||
Sbjct: 38 acatcattaaatgaatgaaccta 16
Score = 79.8 bits (40), Expect = 7e-15
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 10 aaaatttacattttagattcattcatttaatgatgcacatggtctttattgtagaccaca 69
|||||| || |||||| |||||||||||||||||| | |||| || | |||||||||
Sbjct: 3 aaaattcactttttaggttcattcatttaatgatgtatgtggttcataatatagaccaca 62
Query: 70 tacatcattaaatgaatgaaccta 93
||||||||||||||||||||||||
Sbjct: 63 tacatcattaaatgaatgaaccta 86
>RF00906;MIR1122;AC144431.11/23911-24067 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 75.8 bits (38), Expect = 1e-13
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 20 ttttagattcattcatttaatgatgcacatggtctttattgtagaccacatacatcatta 79
|||||| |||||||||||||||||| | |||| |||| | |||||||||||||||||
Sbjct: 117 ttttaggttcattcatttaatgatgtatgtggttcatattatggaccacatacatcatta 58
Query: 80 aatgaatgaaccta 93
||||||||||||||
Sbjct: 57 aatgaatgaaccta 44
Score = 71.9 bits (36), Expect = 2e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 10 aaaatttacattttagattcattcatttaatgatgcacatggtctttattgtagaccaca 69
|||||| || |||||| |||||||||||||||||| | ||||| || | | ||||||
Sbjct: 31 aaaattcactttttaggttcattcatttaatgatgtatgtggtccataatatgaaccaca 90
Query: 70 tacatcattaaatgaatgaaccta 93
||||||||||||||||||||||||
Sbjct: 91 tacatcattaaatgaatgaaccta 114
>RF00906;MIR1122;AC170084.14/53354-53198 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 75.8 bits (38), Expect = 1e-13
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 20 ttttagattcattcatttaatgatgcacatggtctttattgtagaccacatacatcatta 79
||||||||||||||||||||||||| | ||||| |||| | ||||||||||||||||
Sbjct: 41 ttttagattcattcatttaatgatgtatgtggtccatattatgaaccacatacatcatta 100
Query: 80 aatgaatgaaccta 93
||||||||| ||||
Sbjct: 101 aatgaatgatccta 114
Score = 56.0 bits (28), Expect = 1e-07
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 10 aaaatttacattttagattcattcatttaatgatgcacatggtctttattgtagaccaca 69
|||||| || |||||| ||||||||||||||||| | |||| || | | |||||||
Sbjct: 127 aaaattcactttttaggatcattcatttaatgatgtatgtggttcataatatggaccaca 68
Query: 70 tacatcattaaatgaatgaa 89
||||||||||||||||||||
Sbjct: 67 tacatcattaaatgaatgaa 48
>RF00906;MIR1122;AC157502.2/65328-65172 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 71.9 bits (36), Expect = 2e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 10 aaaatttacattttagattcattcatttaatgatgcacatggtctttattgtagaccaca 69
||||||||| |||||| ||||||||||| |||||| | |||| || | | |||||||
Sbjct: 31 aaaatttactttttaggttcattcattttatgatgtatgtggttcataatatggaccaca 90
Query: 70 tacatcattaaatgaatgaaccta 93
||||||||||||||||||||||||
Sbjct: 91 tacatcattaaatgaatgaaccta 114
Score = 71.9 bits (36), Expect = 2e-12
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 10 aaaatttacattttagattcattcatttaatgatgcacatggtctttattgtagaccaca 69
||||||||| || ||| |||||||||||||||||| | ||||| |||| | ||||||
Sbjct: 127 aaaatttactttataggttcattcatttaatgatgtatgtggtccatattatgaaccaca 68
Query: 70 tacatcattaaatgaatgaaccta 93
|||||||| |||||||||||||||
Sbjct: 67 tacatcataaaatgaatgaaccta 44
>RF00906;MIR1122;CR962128.2/73361-73205 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 63.9 bits (32), Expect = 4e-10
Identities = 78/92 (84%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 2 tataagcaaaaatttacattttagattcattcatttaatgatgcacatggtctttattgt 61
||||||||||||| || |||||| |||||||| ||||||||| | |||| |||| |
Sbjct: 134 tataagcaaaaatg-actttttaggttcattcaattaatgatgtatgtggttcatattat 76
Query: 62 agaccacatacatcattaaatgaatgaaccta 93
|||||||||||||||||| ||||||||||||
Sbjct: 75 ggaccacatacatcattaattgaatgaaccta 44
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 64 accacatacatcattaaatgaatgaaccta 93
||||||||||||||||| ||||||||||||
Sbjct: 85 accacatacatcattaattgaatgaaccta 114
>RF00906;MIR1122;AC151528.37/26859-27015 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 63.9 bits (32), Expect = 4e-10
Identities = 78/92 (84%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 2 tataagcaaaaatttacattttagattcattcatttaatgatgcacatggtctttattgt 61
||||||||||||| || |||||| ||||||||||||||||| | |||| | |||| |
Sbjct: 24 tataagcaaaaatc-actttttaggttcattcatttaatgatatatgtggtttatattat 82
Query: 62 agaccacatacatcattaaatgaatgaaccta 93
| ||||||||||||||||||||||||||||
Sbjct: 83 gaatcacatacatcattaaatgaatgaaccta 114
Score = 56.0 bits (28), Expect = 1e-07
Identities = 70/84 (83%)
Strand = Plus / Minus
Query: 10 aaaatttacattttagattcattcatttaatgatgcacatggtctttattgtagaccaca 69
|||||| || |||||| |||||||||||||||||| | || | || | || ||||||
Sbjct: 127 aaaattcactttttaggttcattcatttaatgatgtatgtgattcataatataaaccaca 68
Query: 70 tacatcattaaatgaatgaaccta 93
|| |||||||||||||||||||||
Sbjct: 67 tatatcattaaatgaatgaaccta 44
>RF00906;MIR1122;AC153121.15/95512-95668 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 63.9 bits (32), Expect = 4e-10
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 10 aaaatttacattttagattcattcatttaatgatgcacatggtctttattgtagaccaca 69
||||||||| |||||| |||||||||||||||||| | |||| || | | ||| |||
Sbjct: 31 aaaatttactttttaggttcattcatttaatgatgtatctggttcataatatggactaca 90
Query: 70 tacatcattaaatgaatgaaccta 93
|||||||||| |||||||||||||
Sbjct: 91 tacatcattatatgaatgaaccta 114
Score = 56.0 bits (28), Expect = 1e-07
Identities = 70/84 (83%)
Strand = Plus / Minus
Query: 10 aaaatttacattttagattcattcatttaatgatgcacatggtctttattgtagaccaca 69
|||||| || |||||| ||||||||| |||||||| | | ||| |||| | |||| |
Sbjct: 127 aaaattcactttttaggttcattcatataatgatgtatgtagtccatattatgaaccaga 68
Query: 70 tacatcattaaatgaatgaaccta 93
||||||||||||||||||||||||
Sbjct: 67 tacatcattaaatgaatgaaccta 44
>RF00906;MIR1122;AC166744.12/81328-81484 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 63.9 bits (32), Expect = 4e-10
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 10 aaaatttacattttagattcattcatttaatgatgcacatggtctttattgtagaccaca 69
|||||| || ||||||||||||||||||||||||| | |||| || | | ||| |||
Sbjct: 31 aaaattgactttttagattcattcatttaatgatgtatgtggttcataatatggactaca 90
Query: 70 tacatcattaaatgaatgaaccta 93
|||| |||||||||||||||||||
Sbjct: 91 tacaccattaaatgaatgaaccta 114
Score = 56.0 bits (28), Expect = 1e-07
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 10 aaaatttacattttagattcattcatttaatgatgcacatggtctttattgtagaccaca 69
|||||| || |||||| ||||||||||||||| || | | ||| |||| | ||||||
Sbjct: 127 aaaattcactttttaggttcattcatttaatggtgtatgtagtccatattatgaaccaca 68
Query: 70 tacatcattaaatgaatgaa 89
||||||||||||||||||||
Sbjct: 67 tacatcattaaatgaatgaa 48
>RF00906;MIR1122;CU651629.7/82421-82568 3880:Medicago truncatula
(barrel medic)
Length = 148
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 63 gaccacatacatcattaaatgaatgaaccta 93
|||||||||||||||||||||||||||||||
Sbjct: 74 gaccacatacatcattaaatgaatgaaccta 44
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 64 accacatacatcattaaatgaatgaaccta 93
||||||||||||||||||||||||||||||
Sbjct: 76 accacatacatcattaaatgaatgaaccta 105
>RF00906;MIR1122;AC152348.7/114834-114678 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 61.9 bits (31), Expect = 2e-09
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 20 ttttagattcattcatttaatgatgcacatggtctttattgtagaccacatacatcatta 79
|||||| |||||||| ||||||||| | ||||| |||| | |||||||||||||||||
Sbjct: 117 ttttaggttcattcaattaatgatgtatgtggtccatattatggaccacatacatcatta 58
Query: 80 aatgaatgaac 90
| |||||||||
Sbjct: 57 attgaatgaac 47
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 63 gaccacatacatcattaaatgaatgaaccta 93
|||||||||||||||||| ||||||||||||
Sbjct: 84 gaccacatacatcattaattgaatgaaccta 114
>RF00906;MIR1122;AC150978.15/4652-4771 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 63 gaccacatacatcattaaatgaatgaaccta 93
|||||||||||||||||||||||||||||||
Sbjct: 74 gaccacatacatcattaaatgaatgaaccta 44
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 10 aaaatttacattttagattcattcatttaatgatg 44
|||||| || |||||| ||||||||||||||||||
Sbjct: 31 aaaattcactttttaggttcattcatttaatgatg 65
>RF00906;MIR1122;CT009488.4/82368-82212 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 60.0 bits (30), Expect = 7e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 20 ttttagattcattcatttaatgatgcacatggtctttattgtagaccacatacatcatta 79
|||||| |||||||| ||||||||| | ||||| |||| | ||||||||||||||||
Sbjct: 41 ttttaggttcattcaattaatgatgtatgtggtccatattatgaaccacatacatcatta 100
Query: 80 aatgaatgaaccta 93
| ||||||||||||
Sbjct: 101 attgaatgaaccta 114
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 63 gaccacatacatcattaaatgaatgaaccta 93
|||||||||||||||||| ||||||||||||
Sbjct: 74 gaccacatacatcattaattgaatgaaccta 44
>RF00906;MIR1122;AC151727.27/49652-49808 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 58.0 bits (29), Expect = 3e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 21 tttagattcattcatttaatgatgcacatggtctttattgtagaccacatacatcattaa 80
|||||||||||||| | ||||||| | |||||| || | || ||||||||||||||| |
Sbjct: 42 tttagattcattcaatcaatgatgtatgtggtctataatataaaccacatacatcattga 101
Query: 81 atgaatgaaccta 93
||||||||||||
Sbjct: 102 ttgaatgaaccta 114
Score = 52.0 bits (26), Expect = 2e-06
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 20 ttttagattcattcatttaatgatgcacatggtctttattgtagaccacatacatcatta 79
|||||| |||||||| | ||||||| | |||| | |||| ||||||||||||||||||
Sbjct: 117 ttttaggttcattcaatcaatgatgtatgtggtttatattatagaccacatacatcattg 58
Query: 80 aatgaatgaa 89
| ||||||||
Sbjct: 57 attgaatgaa 48
>RF00906;MIR1122;CR931740.2/100033-100141 3880:Medicago truncatula
(barrel medic)
Length = 109
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 66 cacatacatcattaaatgaatgaaccta 93
||||||||||||||||||||||||||||
Sbjct: 71 cacatacatcattaaatgaatgaaccta 44
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 10 aaaatttacattttagattcattcatttaatgatg 44
|||||| || |||||| ||||||||||||||||||
Sbjct: 31 aaaattgactttttaggttcattcatttaatgatg 65
>RF00906;MIR1122;AC207600.4/94361-94205 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 56.0 bits (28), Expect = 1e-07
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 14 tttacattttagattcattcatttaatgatgcacatggtctttattgtagaccacataca 73
||||| |||||| |||||||| ||||||||| | ||||| |||| || ||||||||||
Sbjct: 123 tttactttttaggttcattcaattaatgatgtatgtggtccatattataaaccacataca 64
Query: 74 tcattaaatgaatgaaccta 93
|||| | ||||||||||||
Sbjct: 63 tcatcagttgaatgaaccta 44
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 63 gaccacatacatcattaaatgaatgaaccta 93
|||||||||||||||||| ||||||||||||
Sbjct: 84 gaccacatacatcattaattgaatgaaccta 114
>RF00906;MIR1122;CT571260.1/63696-63540 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 63 gaccacatacatcattaaatgaatgaaccta 93
|||||||||||| ||||||||||||||||||
Sbjct: 84 gaccacatacataattaaatgaatgaaccta 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 10 aaaatttacattttagattcattcatttaatgatgcacatggtctttattgtagaccaca 69
|||||| || |||||| |||||||||||||| ||| | ||||| |||| | |||||
Sbjct: 127 aaaattcactttttaggttcattcatttaattatgtatgtggtccatattatgaaccact 68
Query: 70 tacatcattaaatgaatgaaccta 93
||||||||||||| ||| ||||||
Sbjct: 67 tacatcattaaataaataaaccta 44
>RF00906;MIR1122;AC140029.19/78088-78242 3880:Medicago truncatula
(barrel medic)
Length = 155
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 63 gaccacatacatcattaaatgaatgaaccta 93
|||||||||||||||||| ||||||||||||
Sbjct: 82 gaccacatacatcattaattgaatgaaccta 112
>RF00906;MIR1122;AC147498.15/3925-4071 3880:Medicago truncatula
(barrel medic)
Length = 147
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 64 accacatacatcattaaatgaatgaaccta 93
||||||||||| ||||||||||||||||||
Sbjct: 73 accacatacataattaaatgaatgaaccta 44
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 aaaatttacattttagattcattcatttaat 40
||||||||| |||||| ||||||||||||||
Sbjct: 31 aaaatttactttttaggttcattcatttaat 61
>RF00906;MIR1122;CU137656.2/37315-37460 3880:Medicago truncatula
(barrel medic)
Length = 146
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 64 accacatacatcattaaatgaatgaaccta 93
||||||||||||||||| ||||||||||||
Sbjct: 73 accacatacatcattaattgaatgaaccta 44
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 64 accacatacatcattaaatgaatgaaccta 93
||||||||||||||||| ||||||||||||
Sbjct: 74 accacatacatcattaattgaatgaaccta 103
>RF00906;MIR1122;CT030168.3/87017-87173 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 64 accacatacatcattaaatgaatgaaccta 93
||||||||||||||||| ||||||||||||
Sbjct: 85 accacatacatcattaattgaatgaaccta 114
>RF00906;MIR1122;AC174311.25/90843-90999 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 52.0 bits (26), Expect = 2e-06
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 20 ttttagattcattcatttaatgatgcacatggtctttattgtagaccacatacatcatta 79
|||||| |||||||| |||||| |||| ||||| || | | | |||||||||||||||
Sbjct: 117 ttttaggttcattcaattaatggtgcatgtggtccataatatggtccacatacatcatta 58
Query: 80 aatgaatgaaccta 93
| ||||||||||||
Sbjct: 57 attgaatgaaccta 44
Score = 44.1 bits (22), Expect = 4e-04
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 20 ttttagattcattcatttaatgatgcacatggtctttattgtagaccacatacatcatta 79
|||||| |||||||| ||||||||| | ||| | |||| | |||||||| || |||||
Sbjct: 41 ttttaggttcattcaattaatgatgtatgtggaccatattatggaccacatgcaccatta 100
Query: 80 aatgaatgaaccta 93
| ||||||||||||
Sbjct: 101 attgaatgaaccta 114
>RF00906;MIR1122;AC169181.3/85632-85489 3880:Medicago truncatula
(barrel medic)
Length = 144
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 65 ccacatacatcattaaatgaatgaaccta 93
|||||||||||||||||| ||||||||||
Sbjct: 72 ccacatacatcattaaataaatgaaccta 44
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 ccacatacatcattaaatgaatgaaccta 93
|||||||||||||||||| ||||||||||
Sbjct: 73 ccacatacatcattaaataaatgaaccta 101
>RF00906;MIR1122;AC166046.15/79888-79744 3880:Medicago truncatula
(barrel medic)
Length = 145
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 63 gaccacatacatcattaaatgaatgaaccta 93
|||||||||||||||| | ||||||||||||
Sbjct: 74 gaccacatacatcattgattgaatgaaccta 44
>RF00906;MIR1122;AC124215.21/33270-33153 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 10 aaaatttacattttagattcattcatttaatgatg 44
|||||| || |||||| ||||||||||||||||||
Sbjct: 88 aaaattcactttttaggttcattcatttaatgatg 54
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 catcattaaatgaatgaaccta 93
||||||||||||||||||||||
Sbjct: 54 catcattaaatgaatgaaccta 75
