miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40834_mtr-MIR2602b:mirbase
Length = 169
Score = 280 bits (141), Expect = 3e-76
Identities = 160/165 (96%), Gaps = 1/165 (0%)
Strand = Plus / Plus
Query: 1 actgccacatcactaattcgatgacgtggcaatcactaccacacatgaaattccaattta 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgccacgtcactaattcgatgacgtggcaatcactaccacacatgaaattccaatttt 60
Query: 61 gcccttaagaagaggacaaaatattgaagaaagaattggaaacccaggggtaaaattaga 120
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct: 61 gcccttaagaagaggacaaa-tattgaagaaagaattggaaactcaggggtaaaattgga 119
Query: 121 atttcatgtatggcagtgattgccacgtcatcaaattagtgacat 165
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atttcatgtatggcagtgattgccacgtcatcaaattagtgacat 164
Score = 75.8 bits (38), Expect = 1e-14
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 10 tcactaattcgatgacgtggcaatcactaccacacatgaaattccaattt 59
||||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct: 161 tcactaatttgatgacgtggcaatcactgccatacatgaaattccaattt 112
Score = 71.9 bits (36), Expect = 1e-13
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 112 aaaattagaatttcatgtatggcagtgattgccacgtcatcaaattagtgac 163
|||||| ||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 60 aaaattggaatttcatgtgtggtagtgattgccacgtcatcgaattagtgac 9
>40780_mtr-MIR2585a:mirbase
Length = 346
Score = 170 bits (86), Expect = 2e-43
Identities = 117/126 (92%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 4 gccacatcactaattcgatgacgtggcaatcactaccacacatgaaattccaatttagcc 63
||||| ||||| ||| |||||||| ||||||||| ||||||||||||||||||||| |||
Sbjct: 107 gccacgtcacttatttgatgacgtcgcaatcactgccacacatgaaattccaattttgcc 166
Query: 64 cttaagaagaggacaaaatattgaagaaagaattggaaacccaggggtaaaattagaatt 123
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 167 cttaagaagaggacaaaatattgaagaaagaattgg-aacccaggggtaaaattggaatt 225
Query: 124 tcatgt 129
| ||||
Sbjct: 226 ttatgt 231
Score = 71.9 bits (36), Expect = 1e-13
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 112 aaaattagaatttcatgtatggcagtgattgccacgtcatcaaattagtgac 163
|||||| ||||||||||| ||||||||||||| |||||||||||| ||||||
Sbjct: 163 aaaattggaatttcatgtgtggcagtgattgcgacgtcatcaaataagtgac 112
>40781_mtr-MIR2585b:mirbase
Length = 336
Score = 165 bits (83), Expect = 1e-41
Identities = 116/127 (91%)
Strand = Plus / Plus
Query: 31 aatcactaccacacatgaaattccaatttagcccttaagaagaggacaaaatattgaaga 90
||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 97 aatcactgccacacataaaattccaattctgcccttaagaagatgacaaaatattgaaga 156
Query: 91 aagaattggaaacccaggggtaaaattagaatttcatgtatggcagtgattgccacgtca 150
|||||||||||||| |||||||||||| ||||||||||| | ||||||||| |||||||
Sbjct: 157 aagaattggaaacctaggggtaaaattggaatttcatgtgtaacagtgattgacacgtca 216
Query: 151 tcaaatt 157
|||||||
Sbjct: 217 tcaaatt 223
Score = 54.0 bits (27), Expect = 3e-08
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 1 actgccacatcactaattcgatgacgtggcaatcactaccacacatgaaattccaattt 59
|||||||| ||| |||| ||||||||| |||||||| |||||||||||||||||||
Sbjct: 237 actgccacgtcaagaatttgatgacgtgtcaatcactgttacacatgaaattccaattt 179
>40782_mtr-MIR2585c:mirbase
Length = 339
Score = 161 bits (81), Expect = 2e-40
Identities = 118/129 (91%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 1 actgccacatcactaattcgatgacgtggcaatcactaccacacatgaaattccaattta 60
|||||||| ||||||||| ||||| |||||||||||| ||| |||||||||||||||||
Sbjct: 102 actgccacgtcactaatttgatgatgtggcaatcactgccaaacatgaaattccaatttt 161
Query: 61 gcccttaagaagaggacaaaatattgaagaaagaattggaaacccaggggtaaaattaga 120
|||||||||||||||||||||||||||| |||| |||||||| || ||||||||||| ||
Sbjct: 162 gcccttaagaagaggacaaaatattgaa-aaaggattggaaatcctggggtaaaattgga 220
Query: 121 atttcatgt 129
|||||||||
Sbjct: 221 atttcatgt 229
Score = 79.8 bits (40), Expect = 6e-16
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 112 aaaattagaatttcatgtatggcagtgattgccacgtcatcaaattagtgac 163
|||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 161 aaaattggaatttcatgtttggcagtgattgccacatcatcaaattagtgac 110
