miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40833_mtr-MIR2602a:mirbase
Length = 170
Score = 280 bits (141), Expect = 3e-76
Identities = 160/165 (96%), Gaps = 1/165 (0%)
Strand = Plus / Plus
Query: 1 actgccacgtcactaattcgatgacgtggcaatcactaccacacatgaaattccaatttt 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgccacatcactaattcgatgacgtggcaatcactaccacacatgaaattccaattta 60
Query: 61 gcccttaagaagaggacaaa-tattgaagaaagaattggaaactcaggggtaaaattgga 119
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct: 61 gcccttaagaagaggacaaaatattgaagaaagaattggaaacccaggggtaaaattaga 120
Query: 120 atttcatgtatggcagtgattgccacgtcatcaaattagtgacat 164
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttcatgtatggcagtgattgccacgtcatcaaattagtgacat 165
Score = 75.8 bits (38), Expect = 9e-15
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 112 aaattggaatttcatgtatggcagtgattgccacgtcatcaaattagtga 161
||||||||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct: 59 aaattggaatttcatgtgtggtagtgattgccacgtcatcgaattagtga 10
Score = 71.9 bits (36), Expect = 1e-13
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 9 gtcactaattcgatgacgtggcaatcactaccacacatgaaattccaatttt 60
|||||||||| |||||||||||||||||| ||| ||||||||||| ||||||
Sbjct: 163 gtcactaatttgatgacgtggcaatcactgccatacatgaaattctaatttt 112
>40780_mtr-MIR2585a:mirbase
Length = 346
Score = 170 bits (86), Expect = 2e-43
Identities = 118/126 (93%), Gaps = 2/126 (1%)
Strand = Plus / Plus
Query: 4 gccacgtcactaattcgatgacgtggcaatcactaccacacatgaaattccaattttgcc 63
||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 107 gccacgtcacttatttgatgacgtcgcaatcactgccacacatgaaattccaattttgcc 166
Query: 64 cttaagaagaggac-aaatattgaagaaagaattggaaactcaggggtaaaattggaatt 122
|||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 167 cttaagaagaggacaaaatattgaagaaagaattgg-aacccaggggtaaaattggaatt 225
Query: 123 tcatgt 128
| ||||
Sbjct: 226 ttatgt 231
Score = 79.8 bits (40), Expect = 6e-16
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 111 aaaattggaatttcatgtatggcagtgattgccacgtcatcaaattagtgac 162
|||||||||||||||||| ||||||||||||| |||||||||||| ||||||
Sbjct: 163 aaaattggaatttcatgtgtggcagtgattgcgacgtcatcaaataagtgac 112
>40782_mtr-MIR2585c:mirbase
Length = 339
Score = 161 bits (81), Expect = 2e-40
Identities = 119/129 (92%), Gaps = 2/129 (1%)
Strand = Plus / Plus
Query: 1 actgccacgtcactaattcgatgacgtggcaatcactaccacacatgaaattccaatttt 60
|||||||||||||||||| ||||| |||||||||||| ||| ||||||||||||||||||
Sbjct: 102 actgccacgtcactaatttgatgatgtggcaatcactgccaaacatgaaattccaatttt 161
Query: 61 gcccttaagaagaggac-aaatattgaagaaagaattggaaactcaggggtaaaattgga 119
||||||||||||||||| |||||||||| |||| |||||||| | ||||||||||||||
Sbjct: 162 gcccttaagaagaggacaaaatattgaa-aaaggattggaaatcctggggtaaaattgga 220
Query: 120 atttcatgt 128
|||||||||
Sbjct: 221 atttcatgt 229
Score = 87.7 bits (44), Expect = 2e-18
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 111 aaaattggaatttcatgtatggcagtgattgccacgtcatcaaattagtgac 162
|||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 161 aaaattggaatttcatgtttggcagtgattgccacatcatcaaattagtgac 110
>40781_mtr-MIR2585b:mirbase
Length = 336
Score = 157 bits (79), Expect = 3e-39
Identities = 116/127 (91%), Gaps = 1/127 (0%)
Strand = Plus / Plus
Query: 31 aatcactaccacacatgaaattccaattttgcccttaagaagaggacaaa-tattgaaga 89
||||||| |||||||| ||||||||||| |||||||||||||| |||||| |||||||||
Sbjct: 97 aatcactgccacacataaaattccaattctgcccttaagaagatgacaaaatattgaaga 156
Query: 90 aagaattggaaactcaggggtaaaattggaatttcatgtatggcagtgattgccacgtca 149
||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||
Sbjct: 157 aagaattggaaacctaggggtaaaattggaatttcatgtgtaacagtgattgacacgtca 216
Query: 150 tcaaatt 156
|||||||
Sbjct: 217 tcaaatt 223
Score = 63.9 bits (32), Expect = 4e-11
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 1 actgccacgtcactaattcgatgacgtggcaatcactaccacacatgaaattccaatttt 60
|||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||
Sbjct: 237 actgccacgtcaagaatttgatgacgtgtcaatcactgttacacatgaaattccaatttt 178
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 113 aattggaatttcatgtatggcagtgatt 140
||||||||||| |||| |||||||||||
Sbjct: 124 aattggaattttatgtgtggcagtgatt 97
