miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40840_mtr-MIR2606c:mirbase
Length = 174
Score = 345 bits (174), Expect = 7e-96
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 1 aggagaaaacttaggtacaattccttaggtgctttttgtatggttctttactaaatttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggagaaaacttaggtacaattccttaggtgctttttgtatggttctttactaaatttac 60
Query: 61 catgatttcctcaaatgcataattttctcaaagtttgttatatccaaataatatgtattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catgatttcctcaaatgcataattttctcaaagtttgttatatccaaataatatgtattt 120
Query: 121 ttagttaagaaccatatgaaaagcacataaggaattgtacctaagttttctcca 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttagttaagaaccatatgaaaagcacataaggaattgtacctaagttttctcca 174
Score = 75.8 bits (38), Expect = 1e-14
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 120 tttagttaagaaccatatgaaaagcacataaggaattgtacctaagttttctcc 173
|||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 55 tttagtaaagaaccatacaaaaagcacctaaggaattgtacctaagttttctcc 2
Score = 75.8 bits (38), Expect = 1e-14
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 2 ggagaaaacttaggtacaattccttaggtgctttttgtatggttctttactaaa 55
|||||||||||||||||||||||||| |||||||| |||||||||| ||||||
Sbjct: 173 ggagaaaacttaggtacaattccttatgtgcttttcatatggttcttaactaaa 120
>40838_mtr-MIR2606a:mirbase
Length = 187
Score = 258 bits (130), Expect = 1e-69
Identities = 160/170 (94%)
Strand = Plus / Minus
Query: 4 agaaaacttaggtacaattccttaggtgctttttgtatggttctttactaaatttaccat 63
|||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct: 176 agaaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaaatttaccat 117
Query: 64 gatttcctcaaatgcataattttctcaaagtttgttatatccaaataatatgtattttta 123
||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 116 gattttctcagatccataattttctcaaagtttgttatatccaaaaaatatgtattttta 57
Query: 124 gttaagaaccatatgaaaagcacataaggaattgtacctaagttttctcc 173
|||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 56 attaagaaccatacgaaaagcacctaaggaattgtacctaagttttctcc 7
Score = 87.7 bits (44), Expect = 3e-18
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 1 aggagaaaacttaggtacaattccttaggtgctttttgtatggttctt 48
|||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6 aggagaaaacttaggtacaattccttaggtgcttttcgtatggttctt 53
Score = 79.8 bits (40), Expect = 6e-16
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 120 tttagttaagaaccatatgaaaagcacataaggaattgtacctaagttttct 171
||||||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct: 125 tttagttaagaaccatacgaaaaacacctaaggaattgtacctaagttttct 176
