miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40874_mtr-MIR2629b:mirbase
          Length = 61

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagttttcctcggtagttaactgcagtcggttccataattcggcagttaactgccgaggg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aagttttcctcggtagttaactgcagtcggttccataattcggcagttaactgccgaggg 60

           
Query: 61 g 61
          |
Sbjct: 61 g 61





>40873_mtr-MIR2629a:mirbase
          Length = 59

 Score = 99.6 bits (50), Expect = 2e-22
 Identities = 56/58 (96%)
 Strand = Plus / Plus

                                                                    
Query: 2  agttttcctcggtagttaactgcagtcggttccataattcggcagttaactgccgagg 59
          |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 2  agttttcctcggtagttaactgcagctggttccataattcggcagttaactgccgagg 59





>40877_mtr-MIR2629e:mirbase
          Length = 109

 Score = 65.9 bits (33), Expect = 3e-12
 Identities = 56/63 (88%), Gaps = 3/63 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagttttcctcggtagttaactgcagtcggttcc---ataattcggcagttaactgccga 57
          |||||||||||||||||||||||||||| |||||   | |||||| |||||| |||||||
Sbjct: 20 aagttttcctcggtagttaactgcagtcagttccaataaaattcgacagttagctgccga 79

             
Query: 58 ggg 60
          |||
Sbjct: 80 ggg 82





>40876_mtr-MIR2629d:mirbase
          Length = 95

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 31 ttccataattcggcagttaactgccga 57
          |||||||||||||||||||||||||||
Sbjct: 40 ttccataattcggcagttaactgccga 66





>40879_mtr-MIR2629g:mirbase
          Length = 274

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 1   aagttttcctcggtagttaactgca 25
           |||||||||||||||||||||||||
Sbjct: 235 aagttttcctcggtagttaactgca 259





>40878_mtr-MIR2629f:mirbase
          Length = 87

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagttttcctcggtagttaactgc 24
          ||||||||||||||||||||||||
Sbjct: 53 aagttttcctcggtagttaactgc 76





>40754_mtr-MIR2087:mirbase
          Length = 265

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 4   ttttcctcggtagttaactgcagtcggttccataattcggcagttaac 51
           ||||| |||| |||||||||||||||||| | || ||||| |||||||
Sbjct: 145 ttttcgtcggcagttaactgcagtcggtttcttacttcggtagttaac 192