miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54380_pvu-miR319c:pmrd
Length = 734
Score = 1455 bits (734), Expect = 0.0
Identities = 734/734 (100%)
Strand = Plus / Plus
Query: 1 attttttccatggtcactctcattacaacctgctagtcctttttcgtctttacggttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attttttccatggtcactctcattacaacctgctagtcctttttcgtctttacggttttc 60
Query: 61 ctttctttataactctgcttgctactcttgcatctcttcagcgcaggaatcgataaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctttctttataactctgcttgctactcttgcatctcttcagcgcaggaatcgataaaaac 120
Query: 121 atgccagaattagggtttctggtagccatgcttttcagttttagctctaaggaagaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgccagaattagggtttctggtagccatgcttttcagttttagctctaaggaagaaggg 180
Query: 181 aaaaggatgtacatgtgcagagttcgactacagctttagtcacattgggaaggaaagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaaggatgtacatgtgcagagttcgactacagctttagtcacattgggaaggaaagaga 240
Query: 241 gtgaaggagcttccctcagcccattcatggatacaaaagattgggttgcaaaattaacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgaaggagcttccctcagcccattcatggatacaaaagattgggttgcaaaattaacca 300
Query: 301 ctaactcattcacacaatagtattcagttagggtgatgctctttttgctataatatgatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctaactcattcacacaatagtattcagttagggtgatgctctttttgctataatatgatt 360
Query: 361 gtgtgaatgaagtgatgcatacatattgtgtgaccctctttctctgagcttggactgaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtgtgaatgaagtgatgcatacatattgtgtgaccctctttctctgagcttggactgaag 420
Query: 421 ggagctccttctttctgttgcctccatttgtattcatctctcagatggccatgtctaagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggagctccttctttctgttgcctccatttgtattcatctctcagatggccatgtctaagc 480
Query: 481 ttaatctatatatgcttagcacaaaaaaggtgaggccattacactgtagctgatgttaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttaatctatatatgcttagcacaaaaaaggtgaggccattacactgtagctgatgttaca 540
Query: 541 tatcgtcttctagctctttgtaagtatccactctctgccacaactgcacaagattcagca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatcgtcttctagctctttgtaagtatccactctctgccacaactgcacaagattcagca 600
Query: 601 aaaacatctgaacagttgcatatgaacagttacatacatgcagtaatttgtttagcttag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaaacatctgaacagttgcatatgaacagttacatacatgcagtaatttgtttagcttag 660
Query: 661 tcttttaaatgatcactacatatctataaatgaatttatgtaattactttctacacaaag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcttttaaatgatcactacatatctataaatgaatttatgtaattactttctacacaaag 720
Query: 721 ctctatgtcacttc 734
||||||||||||||
Sbjct: 721 ctctatgtcacttc 734
>48574_gma-miR319c:pmrd
Length = 221
Score = 85.7 bits (43), Expect = 5e-17
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 225 ttgggaaggaaagagagtgaaggagcttccctcagcccattcatgga 271
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgggagggaaagagagtgaaggagcttccctcagcccattcatgga 47
Score = 67.9 bits (34), Expect = 1e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 393 accctctttctctgagcttggactgaagggagctccttcttt 434
|||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 166 accctctttctctgtgcttggactgaaaggagctccttcttt 207
>51712_ptc-miR319f:pmrd
Length = 202
Score = 61.9 bits (31), Expect = 7e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 394 ccctctttctctgagcttggactgaagggagctccttctttct 436
|||||||| |||| |||||||||||||||||||||||| ||||
Sbjct: 158 ccctctttttctgtgcttggactgaagggagctccttccttct 200
>51351_ppl-miR319:pmrd
Length = 204
Score = 61.9 bits (31), Expect = 7e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 394 ccctctttctctgagcttggactgaagggagctccttctttct 436
|||||||| |||| |||||||||||||||||||||||| ||||
Sbjct: 158 ccctctttttctgtgcttggactgaagggagctccttccttct 200
>51713_ptc-miR319g:pmrd
Length = 204
Score = 52.0 bits (26), Expect = 6e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 403 tctgagcttggactgaagggagctccttctttct 436
|||| |||||||||||||||||||||||| ||||
Sbjct: 169 tctgtgcttggactgaagggagctccttccttct 202
>46994_ath-miR319c:pmrd
Length = 199
Score = 52.0 bits (26), Expect = 6e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 397 tctttctctgagcttggactgaagggagctccttcttt 434
||||| |||| | |||||||||||||||||||||||||
Sbjct: 157 tctttatctgtgtttggactgaagggagctccttcttt 194
>51710_ptc-miR319d:pmrd
Length = 193
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 400 ttctctgagcttggactgaagggagctcc 428
||||||| |||||||||||||||||||||
Sbjct: 155 ttctctgtgcttggactgaagggagctcc 183
>51709_ptc-miR319c:pmrd
Length = 196
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 400 ttctctgagcttggactgaagggagctcc 428
||||||| |||||||||||||||||||||
Sbjct: 158 ttctctgtgcttggactgaagggagctcc 186
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 400 ttctctgagcttggactgaagggagctc 427
||||||| ||||||||||||||||||||
Sbjct: 143 ttctctgtgcttggactgaagggagctc 170
>54846_vvi-miR319f:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 403 tctgagcttggactgaagggagctcc 428
|||| |||||||||||||||||||||
Sbjct: 155 tctgtgcttggactgaagggagctcc 180
>54844_vvi-miR319c:pmrd
Length = 182
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 408 gcttggactgaagggagctcc 428
|||||||||||||||||||||
Sbjct: 149 gcttggactgaagggagctcc 169
>54686_tae-miR319a:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 408 gcttggactgaagggagctcc 428
|||||||||||||||||||||
Sbjct: 175 gcttggactgaagggagctcc 195
>51385_ppt-miR319b:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 409 cttggactgaagggagctcct 429
|||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcct 160
>46993_ath-miR319b:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 408 gcttggactgaagggagctcc 428
|||||||||||||||||||||
Sbjct: 150 gcttggactgaagggagctcc 170
