miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 63 ctaaccctagctaggtcatgctgcgacagcctcactccttcct 105
||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 58 ctaaccctagctaggtcatgctgtgacagcctcactccttcct 100
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 gggaaaaagtgaagctgccagcatgatctatctt 34
||||||||||||||||||||||||||||||||||
Sbjct: 5 gggaaaaagtgaagctgccagcatgatctatctt 38
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 73.8 bits (37), Expect = 4e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 61 tgctaaccctagctaggtcatgctgcgacagcctcactccttcct 105
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 96 tgctaaccctagctaggtcatgctctgacagcctcactccttcct 140
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gggaaaaagtgaagctgccagcatgatcta 30
||||||| ||||||||||||||||||||||
Sbjct: 5 gggaaaaggtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 73.8 bits (37), Expect = 4e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 61 tgctaaccctagctaggtcatgctgcgacagcctcactccttcct 105
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 75 tgctaaccctgactaggtcatgctgcgacagcctcactccttcct 119
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 gggaaaaagtgaagctgccagcatgatcta 30
||||||||||||||||||||||||||||||
Sbjct: 5 gggaaaaagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 64 taaccctagctaggtcatgctgcgacagcctcactccttcc 104
||||||||||||||||||||||||||||||||||| |||||
Sbjct: 95 taaccctagctaggtcatgctgcgacagcctcacttcttcc 135
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 agtgaagctgccagcatgatcta 30
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 69.9 bits (35), Expect = 6e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 63 ctaaccctagctaggtcatgctgcgacagcctcactccttcct 105
|||||||||||||||||||||| |||||||||||||||||||
Sbjct: 67 ctaaccctagctaggtcatgctctgacagcctcactccttcct 109
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 gggaaaaagtgaagctgccagcatgatctatctt 34
||||||| ||||||||||||||||||||||||||
Sbjct: 5 gggaaaaggtgaagctgccagcatgatctatctt 38
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 62 gctaaccctagctaggtcatgctgcgacagcctcactccttcct 105
|||||||||||||||||||||| |||||||||||||||||||
Sbjct: 72 gctaaccctagctaggtcatgccctgacagcctcactccttcct 115
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gggaaaaagtgaagctgccagcatgatcta 30
||||| ||||||||||||||||||||||||
Sbjct: 5 gggaataagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 64 taaccctagctaggtcatgctgcgacagcctcactccttcct 105
||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 64 taaccctagttaggtcatgctctgacagcctcactccttcct 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 ggaaaaagtgaagctgccagcatgatcta 30
|||||||||||||||||||||||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 gggaaaaagtgaagctgccagcatgatctatctt 34
||||| ||||||||||||||||||||||||||||
Sbjct: 5 gggaacaagtgaagctgccagcatgatctatctt 38
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 65 aaccctagctaggtcatgctgcgacagcctcactccttcct 105
||||| |||||||||||||| |||||||||||||||||||
Sbjct: 73 aacccaagctaggtcatgctctgacagcctcactccttcct 113
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 ggaaaaagtgaagctgccagcatgatcta 30
|||||||||||||||||||||||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatcta 34
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 64 taaccctagctaggtcatgctgcgacagcctcactccttcct 105
||||||| ||||||||||||| | ||||||||||||||||
Sbjct: 290 taaccctgactaggtcatgctgtgctagcctcactccttcct 331
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 2 ggaaaaagtgaagctgccagcatgatcta 30
|||| ||||||||||||||||||||||||
Sbjct: 6 ggaacaagtgaagctgccagcatgatcta 34
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 74 taggtcatgctgcgacagcctcactccttcct 105
||||||||||| |||||||||||||||||||
Sbjct: 72 taggtcatgctcggacagcctcactccttcct 103
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 72 gctaggtcatgctgcgacagcctcactccttcc 104
|||||||||||||||| |||||||||| |||||
Sbjct: 85 gctaggtcatgctgcggcagcctcacttcttcc 117
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 agtgaagctgccagcatgatcta 30
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa Japonica
Group
Length = 152
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 72 gctaggtcatgctgcgacagcctcactccttcc 104
|||||||||||||||| |||||||||| |||||
Sbjct: 116 gctaggtcatgctgcggcagcctcacttcttcc 148
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 agtgaagctgccagcatgatcta 30
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 gaaaaagtgaagctgccagcatgatcta 30
|||| |||||||||||||||||||||||
Sbjct: 7 gaaagagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 tgaagctgccagcatgatctatcttcc 36
||||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaacttcc 40
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 agtgaagctgccagcatgatcta 30
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 agtgaagctgccagcatgatcta 30
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 agtgaagctgccagcatgatcta 30
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gtgaagctgccagcatgatcta 30
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
