miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41057_ghr-MIR396a:mirbase
Length = 136
Score = 244 bits (123), Expect = 1e-65
Identities = 132/135 (97%)
Strand = Plus / Plus
Query: 1 cttcgtattcttccacagctttcttgaactgcaatttcatgtaatcagatcattcattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcgtattcttccacagctttcttgaactgcaatttcatgtaatcagatcattcattca 60
Query: 61 ttcattgtcgttgatggtgttgcatacatacgagtacgttgttgcggttcaataaagctg 120
||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 ttcgttgtcgttgatggtgctgcatatatacgagtacgttgttgcggttcaataaagctg 120
Query: 121 tgggaagatacaaac 135
|||||||||||||||
Sbjct: 121 tgggaagatacaaac 135
>41242_csi-MIR396b:mirbase
Length = 134
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 99 ttgttgcggttcaataaagctgtgggaagatacaaac 135
|||||||||||||||||||||||||||||||||||||
Sbjct: 79 ttgttgcggttcaataaagctgtgggaagatacaaac 115
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtattcttccacagctttcttgaactgca 33
||||| |||||||||||||||||||||||
Sbjct: 14 gtatttttccacagctttcttgaactgca 42
>41435_ptc-MIR396a:mirbase
Length = 123
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 99 ttgttgcggttcaataaagctgtgggaagatacaa 133
|||||||||||||||||||||||||||||||||||
Sbjct: 89 ttgttgcggttcaataaagctgtgggaagatacaa 123
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtattcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
>41139_tcc-MIR396b:mirbase
Length = 151
Score = 65.9 bits (33), Expect = 7e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 87 catacgagtacgttgttgcggttcaataaagctgtgggaagatac 131
|||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct: 93 catacgggtatgttgttgcagttcaataaagctgtgggaagatac 137
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 gtattcttccacagctttcttgaactgc 32
||||||||||||||||||||||||||||
Sbjct: 15 gtattcttccacagctttcttgaactgc 42
>41663_vvi-MIR396d:mirbase
Length = 120
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 101 gttgcggttcaataaagctgtgggaagatac 131
|||||||||||||||||||||||||||||||
Sbjct: 84 gttgcggttcaataaagctgtgggaagatac 114
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtattcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
>41436_ptc-MIR396b:mirbase
Length = 132
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 103 tgcggttcaataaagctgtgggaagatacaa 133
|||||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagatacaa 132
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtattcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
>40473_gma-MIR396a:mirbase
Length = 140
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 102 ttgcggttcaataaagctgtgggaagataca 132
|||||||||||||||||||||||||||||||
Sbjct: 98 ttgcggttcaataaagctgtgggaagataca 128
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtattcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||||||
Sbjct: 15 gtattcttccacagctttcttgaactgca 43
>40085_ath-MIR396a:mirbase
Length = 151
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 102 ttgcggttcaataaagctgtgggaagataca 132
|||||||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagataca 148
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 gtattcttccacagctttcttgaactgcaa 34
||||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgcaa 34
>39877_aly-MIR396a:mirbase
Length = 172
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 gtattcttccacagctttcttgaactgcaa 34
||||||||||||||||||||||||||||||
Sbjct: 18 gtattcttccacagctttcttgaactgcaa 47
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 102 ttgcggttcaataaagctgtgggaagatac 131
||||||||||||||||||||||||||||||
Sbjct: 128 ttgcggttcaataaagctgtgggaagatac 157
>40727_mtr-MIR396b:mirbase
Length = 95
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 102 ttgcggttcaataaagctgtgggaagata 130
|||||||||||||||||||||||||||||
Sbjct: 67 ttgcggttcaataaagctgtgggaagata 95
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 tattcttccacagctttcttgaactgca 33
||||||||||||||||||||||||||||
Sbjct: 1 tattcttccacagctttcttgaactgca 28
>40646_lja-MIR396:mirbase
Length = 108
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtattcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||||||
Sbjct: 10 gtattcttccacagctttcttgaactgca 38
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 102 ttgcggttcaataaagctgtgggaagata 130
|||||||||||||||||||||||||||||
Sbjct: 71 ttgcggttcaataaagctgtgggaagata 99
>42814_zma-MIR396h:mirbase
Length = 124
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 100 tcttccacagctttcttgaactgca 76
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 107 gttcaataaagctgtgggaa 126
||||||||||||||||||||
Sbjct: 20 gttcaataaagctgtgggaa 1
>42813_zma-MIR396g:mirbase
Length = 114
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 113 tcttccacagctttcttgaactgca 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 107 gttcaataaagctgtgggaa 126
||||||||||||||||||||
Sbjct: 20 gttcaataaagctgtgggaa 1
>42808_zma-MIR396b:mirbase
Length = 136
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 gttcaataaagctgtgggaa 126
||||||||||||||||||||
Sbjct: 99 gttcaataaagctgtgggaa 118
>42807_zma-MIR396a:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 gttcaataaagctgtgggaa 126
||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119
>42583_sbi-MIR396b:mirbase
Length = 128
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 gttcaataaagctgtgggaa 126
||||||||||||||||||||
Sbjct: 91 gttcaataaagctgtgggaa 110
>42582_sbi-MIR396a:mirbase
Length = 125
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 gttcaataaagctgtgggaa 126
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>42461_sof-MIR396:mirbase
Length = 134
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 gttcaataaagctgtgggaa 126
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>42027_osa-MIR396b:mirbase
Length = 116
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 gttcaataaagctgtgggaa 126
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>42026_osa-MIR396a:mirbase
Length = 154
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 gttcaataaagctgtgggaa 126
||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145
>41794_bdi-MIR396d:mirbase
Length = 152
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgca 55
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 gttcaataaagctgtgggaa 126
||||||||||||||||||||
Sbjct: 101 gttcaataaagctgtgggaa 120
>41188_aqc-MIR396a:mirbase
Length = 122
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 102 ttgcggttcaataaagctgtgggaa 126
|||||||||||||||||||||||||
Sbjct: 97 ttgcggttcaataaagctgtgggaa 121
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgca 33
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>41793_bdi-MIR396c:mirbase
Length = 153
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgc 32
||||||||||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgc 54
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 gttcaataaagctgtgggaa 126
||||||||||||||||||||
Sbjct: 102 gttcaataaagctgtgggaa 121
>42472_ssp-MIR396:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgca 33
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>41662_vvi-MIR396c:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>41241_csi-MIR396a:mirbase
Length = 153
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactg 41
>40477_gma-MIR396e:mirbase
Length = 114
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactg 31
|||||||||||||||||||||||
Sbjct: 5 tcttccacagctttcttgaactg 27
>39379_pab-MIR396a:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaact 30
||||||||||||||||||||||
Sbjct: 14 tcttccacagctttcttgaact 35
>41138_tcc-MIR396a:mirbase
Length = 146
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactg 31
|||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactg 41
>39878_aly-MIR396b:mirbase
Length = 188
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tattcttccacagctttcttgaact 30
|||| ||||||||||||||||||||
Sbjct: 27 tatttttccacagctttcttgaact 51
>42812_zma-MIR396f:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 2 ttccacagctttcttgaact 21
>42811_zma-MIR396e:mirbase
Length = 166
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 2 ttccacagctttcttgaact 21
>42584_sbi-MIR396c:mirbase
Length = 162
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42028_osa-MIR396c:mirbase
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41795_bdi-MIR396e:mirbase
Length = 201
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 32 ttccacagctttcttgaact 51
>41661_vvi-MIR396b:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>41660_vvi-MIR396a:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>41439_ptc-MIR396e:mirbase
Length = 145
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41438_ptc-MIR396d:mirbase
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41437_ptc-MIR396c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41243_csi-MIR396c:mirbase
Length = 178
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 13 ttccacagctttcttgaact 32
>41212_ccl-MIR396:mirbase
Length = 277
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 143 ttccacagctttcttgaact 162
>41189_aqc-MIR396b:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>41142_tcc-MIR396e:mirbase
Length = 146
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>41140_tcc-MIR396c:mirbase
Length = 152
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>40726_mtr-MIR396a:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>40476_gma-MIR396d:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>40475_gma-MIR396c:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>40474_gma-MIR396b:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>40379_rco-MIR396:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>40296_bna-MIR396a:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>40086_ath-MIR396b:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>39426_pta-MIR396:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
