miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AY632360.1/39221-39343 3635:Gossypium hirsutum
(upland cotton)
Length = 123
Score = 242 bits (122), Expect = 9e-64
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1 tgagatattacagggcaaaatcttcagtggcaggcagtatatggctccattcatcaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgagatattacagggcaaaatcttcagtggcaggcagtatatggctccattcatcaggca 61
Query: 61 tcagctgtatggaaaattgcagtgtgttctccgccaatggagatttgtccggtaattccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tcagctgtatggaaaattgcagtgtgttctccgccaatggagatttgtccggtaattccg 121
Query: 121 gt 122
||
Sbjct: 122 gt 123
>RF00445;mir-399;EU626442.1/60145-60273 29730:Gossypium raimondii
Length = 129
Score = 200 bits (101), Expect = 3e-51
Identities = 121/128 (94%), Gaps = 6/128 (4%)
Strand = Plus / Plus
Query: 1 tgagatattacagggcaaaatcttcagtggcaggcag------tatatggctccattcat 54
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 tgagatattacagggcaaaatcttcagtggcaggcagccattgtatatggctccattcat 61
Query: 55 caggcatcagctgtatggaaaattgcagtgtgttctccgccaatggagatttgtccggta 114
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cacgcatcagctgtatggaaaattgcagtgtgttctccgccaatggagatttgtccggta 121
Query: 115 attccggt 122
||||||||
Sbjct: 122 attccggt 129
>RF00445;mir-399;EU626443.1/54050-54178 47615:Gossypioides kirkii
Length = 129
Score = 155 bits (78), Expect = 2e-37
Identities = 113/125 (90%), Gaps = 6/125 (4%)
Strand = Plus / Plus
Query: 1 tgagatattacagggcaaaatcttcagtggcaggcag------tatatggctccattcat 54
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 2 tgagatattacagggcaaaatcttcagtggcaggcagccattgtatacggctccattcat 61
Query: 55 caggcatcagctgtatggaaaattgcagtgtgttctccgccaatggagatttgtccggta 114
|| |||||||||| | ||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 62 caagcatcagctgcacggaaaattgcagtgtgttctctgccgatggagatttgtccggta 121
Query: 115 attcc 119
|||||
Sbjct: 122 attcc 126
